miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2917 3' -59 NC_001493.1 + 3034 0.66 0.801601
Target:  5'- -gGCCGcGGgGAUGGCaUCCUC-GACCu -3'
miRNA:   3'- cgUGGCaCCaCUGCCG-GGGAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 3644 0.66 0.756314
Target:  5'- cGCACa--GG-GGCGcGCUCCUCGGGCg -3'
miRNA:   3'- -CGUGgcaCCaCUGC-CGGGGAGUCUGg -5'
2917 3' -59 NC_001493.1 + 8274 0.69 0.608982
Target:  5'- aGCACCGaugGGUGGgaGCCCCggcgCGGcGCCa -3'
miRNA:   3'- -CGUGGCa--CCACUgcCGGGGa---GUC-UGG- -5'
2917 3' -59 NC_001493.1 + 10108 0.69 0.618973
Target:  5'- aCGCgGUGGUuuguGAUGGucgcggcgcuCCCUUCAGACCc -3'
miRNA:   3'- cGUGgCACCA----CUGCC----------GGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 11105 0.67 0.698608
Target:  5'- --cCCGUGG-GACGGacgcuCacaCUCAGACCg -3'
miRNA:   3'- cguGGCACCaCUGCCg----Gg--GAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 12811 0.67 0.727816
Target:  5'- ---aCGUGGUGAcCGGaCCCgUCcGGCCc -3'
miRNA:   3'- cgugGCACCACU-GCC-GGGgAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 13558 0.66 0.792804
Target:  5'- cGgACCGcGGUGGagaGGCCCg--AGACCg -3'
miRNA:   3'- -CgUGGCaCCACUg--CCGGGgagUCUGG- -5'
2917 3' -59 NC_001493.1 + 14158 0.66 0.756314
Target:  5'- cGCGCCccgGGUGACGa--CCUCGuGACCc -3'
miRNA:   3'- -CGUGGca-CCACUGCcggGGAGU-CUGG- -5'
2917 3' -59 NC_001493.1 + 15663 0.75 0.31664
Target:  5'- aGCACCGUGGUGAgaUGGUCCggagcaaagaAGACCg -3'
miRNA:   3'- -CGUGGCACCACU--GCCGGGgag-------UCUGG- -5'
2917 3' -59 NC_001493.1 + 16245 0.67 0.746907
Target:  5'- -aGCCccGG-GACGGCCCCguacucGACCa -3'
miRNA:   3'- cgUGGcaCCaCUGCCGGGGagu---CUGG- -5'
2917 3' -59 NC_001493.1 + 18547 0.72 0.432363
Target:  5'- -gGCCGUGGacggggguuucaaacUGACcaucgGGCCCCUCAcgguGGCCa -3'
miRNA:   3'- cgUGGCACC---------------ACUG-----CCGGGGAGU----CUGG- -5'
2917 3' -59 NC_001493.1 + 20828 0.67 0.698608
Target:  5'- uGCACgGacUGGUGGCGGCUCUcgGGAUg -3'
miRNA:   3'- -CGUGgC--ACCACUGCCGGGGagUCUGg -5'
2917 3' -59 NC_001493.1 + 24358 0.66 0.792804
Target:  5'- cGCGCUGUGG-GAuUGGUaCC-CGGGCCu -3'
miRNA:   3'- -CGUGGCACCaCU-GCCGgGGaGUCUGG- -5'
2917 3' -59 NC_001493.1 + 24548 0.67 0.727816
Target:  5'- gGCACCGUagcGGUcACGGCCgUUCccguggaacuGACCg -3'
miRNA:   3'- -CGUGGCA---CCAcUGCCGGgGAGu---------CUGG- -5'
2917 3' -59 NC_001493.1 + 30940 0.66 0.774802
Target:  5'- -gGCCGcGGUGACGGCgcggucggcggCCUUCAcGuCCg -3'
miRNA:   3'- cgUGGCaCCACUGCCG-----------GGGAGU-CuGG- -5'
2917 3' -59 NC_001493.1 + 33386 0.67 0.698608
Target:  5'- cCAcCCG-GGUGACGGugcgaucguCCUCUCGGGCg -3'
miRNA:   3'- cGU-GGCaCCACUGCC---------GGGGAGUCUGg -5'
2917 3' -59 NC_001493.1 + 37680 0.73 0.402421
Target:  5'- gGCACCGUGucGGCGGCCgCCUCAaauucuuGACa -3'
miRNA:   3'- -CGUGGCACcaCUGCCGG-GGAGU-------CUGg -5'
2917 3' -59 NC_001493.1 + 44052 1.14 0.000697
Target:  5'- cGCACCGUGGUGACGGCCCCUCAGACCg -3'
miRNA:   3'- -CGUGGCACCACUGCCGGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 58839 0.67 0.744066
Target:  5'- uCACCGcGG-GACGGaaCCCCUucggugucgucccgCGGGCCg -3'
miRNA:   3'- cGUGGCaCCaCUGCC--GGGGA--------------GUCUGG- -5'
2917 3' -59 NC_001493.1 + 62465 0.66 0.774802
Target:  5'- uGC-CCGUGcccGUGGcCGGCUCCcgCGGGCUu -3'
miRNA:   3'- -CGuGGCAC---CACU-GCCGGGGa-GUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.