miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2917 3' -59 NC_001493.1 + 44052 1.14 0.000697
Target:  5'- cGCACCGUGGUGACGGCCCCUCAGACCg -3'
miRNA:   3'- -CGUGGCACCACUGCCGGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 15663 0.75 0.31664
Target:  5'- aGCACCGUGGUGAgaUGGUCCggagcaaagaAGACCg -3'
miRNA:   3'- -CGUGGCACCACU--GCCGGGgag-------UCUGG- -5'
2917 3' -59 NC_001493.1 + 131218 0.75 0.31664
Target:  5'- aGCACCGUGGUGAgaUGGUCCggagcaaagaAGACCg -3'
miRNA:   3'- -CGUGGCACCACU--GCCGGGgag-------UCUGG- -5'
2917 3' -59 NC_001493.1 + 63870 0.73 0.398252
Target:  5'- cGUGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- -CGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 37680 0.73 0.402421
Target:  5'- gGCACCGUGucGGCGGCCgCCUCAaauucuuGACa -3'
miRNA:   3'- -CGUGGCACcaCUGCCGG-GGAGU-------CUGg -5'
2917 3' -59 NC_001493.1 + 18547 0.72 0.432363
Target:  5'- -gGCCGUGGacggggguuucaaacUGACcaucgGGCCCCUCAcgguGGCCa -3'
miRNA:   3'- cgUGGCACC---------------ACUG-----CCGGGGAGU----CUGG- -5'
2917 3' -59 NC_001493.1 + 134102 0.72 0.432363
Target:  5'- -gGCCGUGGacggggguuucaaacUGACcaucgGGCCCCUCAcgguGGCCa -3'
miRNA:   3'- cgUGGCACC---------------ACUG-----CCGGGGAGU----CUGG- -5'
2917 3' -59 NC_001493.1 + 90415 0.72 0.437626
Target:  5'- aGCGCCGUcGUGACGGUCUCgcucaacaCGGGCUu -3'
miRNA:   3'- -CGUGGCAcCACUGCCGGGGa-------GUCUGG- -5'
2917 3' -59 NC_001493.1 + 63584 0.72 0.450046
Target:  5'- uCGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCa -3'
miRNA:   3'- cGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 63913 0.72 0.450046
Target:  5'- uCGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- cGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 87660 0.7 0.569252
Target:  5'- cGC-CCGUGGaGcCGGCUCCUCGuacGCCg -3'
miRNA:   3'- -CGuGGCACCaCuGCCGGGGAGUc--UGG- -5'
2917 3' -59 NC_001493.1 + 63370 0.69 0.589058
Target:  5'- cGCACCGUGGUGAccaccacacCGGCgaugCCCaCGggagcGACCg -3'
miRNA:   3'- -CGUGGCACCACU---------GCCG----GGGaGU-----CUGG- -5'
2917 3' -59 NC_001493.1 + 123828 0.69 0.608982
Target:  5'- aGCACCGaugGGUGGgaGCCCCggcgCGGcGCCa -3'
miRNA:   3'- -CGUGGCa--CCACUgcCGGGGa---GUC-UGG- -5'
2917 3' -59 NC_001493.1 + 8274 0.69 0.608982
Target:  5'- aGCACCGaugGGUGGgaGCCCCggcgCGGcGCCa -3'
miRNA:   3'- -CGUGGCa--CCACUgcCGGGGa---GUC-UGG- -5'
2917 3' -59 NC_001493.1 + 125662 0.69 0.618973
Target:  5'- aCGCgGUGGUuuguGAUGGucgcggcgcuCCCUUCAGACCc -3'
miRNA:   3'- cGUGgCACCA----CUGCC----------GGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 10108 0.69 0.618973
Target:  5'- aCGCgGUGGUuuguGAUGGucgcggcgcuCCCUUCAGACCc -3'
miRNA:   3'- cGUGgCACCA----CUGCC----------GGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 95900 0.69 0.628973
Target:  5'- cGUACCgGUGGccGGCGGUCCgCUC-GACUa -3'
miRNA:   3'- -CGUGG-CACCa-CUGCCGGG-GAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 63280 0.68 0.648972
Target:  5'- gGCACCGUGGUGAccaccacacCGGCgaugCCCgCGGGa- -3'
miRNA:   3'- -CGUGGCACCACU---------GCCG----GGGaGUCUgg -5'
2917 3' -59 NC_001493.1 + 94908 0.68 0.658956
Target:  5'- cGCACaCGguggGGUGAagaucaCGguccucaaggaGCCCCUCGGGCUg -3'
miRNA:   3'- -CGUG-GCa---CCACU------GC-----------CGGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 93949 0.68 0.668921
Target:  5'- aGC-CCGUGGUcACGGCCUCgucgUAGuacGCCc -3'
miRNA:   3'- -CGuGGCACCAcUGCCGGGGa---GUC---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.