miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2917 3' -59 NC_001493.1 + 129713 0.66 0.756314
Target:  5'- cGCGCCccgGGUGACGa--CCUCGuGACCc -3'
miRNA:   3'- -CGUGGca-CCACUGCcggGGAGU-CUGG- -5'
2917 3' -59 NC_001493.1 + 126660 0.67 0.698608
Target:  5'- --cCCGUGG-GACGGacgcuCacaCUCAGACCg -3'
miRNA:   3'- cguGGCACCaCUGCCg----Gg--GAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 12811 0.67 0.727816
Target:  5'- ---aCGUGGUGAcCGGaCCCgUCcGGCCc -3'
miRNA:   3'- cgugGCACCACU-GCC-GGGgAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 24548 0.67 0.727816
Target:  5'- gGCACCGUagcGGUcACGGCCgUUCccguggaacuGACCg -3'
miRNA:   3'- -CGUGGCA---CCAcUGCCGGgGAGu---------CUGG- -5'
2917 3' -59 NC_001493.1 + 128365 0.67 0.727816
Target:  5'- ---aCGUGGUGAcCGGaCCCgUCcGGCCc -3'
miRNA:   3'- cgugGCACCACU-GCC-GGGgAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 78896 0.67 0.737405
Target:  5'- cCGCCGUcagcauucggGGUauGcCGGCCUCggUCAGACCg -3'
miRNA:   3'- cGUGGCA----------CCA--CuGCCGGGG--AGUCUGG- -5'
2917 3' -59 NC_001493.1 + 3644 0.66 0.756314
Target:  5'- cGCACa--GG-GGCGcGCUCCUCGGGCg -3'
miRNA:   3'- -CGUGgcaCCaCUGC-CGGGGAGUCUGg -5'
2917 3' -59 NC_001493.1 + 14158 0.66 0.756314
Target:  5'- cGCGCCccgGGUGACGa--CCUCGuGACCc -3'
miRNA:   3'- -CGUGGca-CCACUGCcggGGAGU-CUGG- -5'
2917 3' -59 NC_001493.1 + 119198 0.66 0.756314
Target:  5'- cGCACa--GG-GGCGcGCUCCUCGGGCg -3'
miRNA:   3'- -CGUGgcaCCaCUGC-CGGGGAGUCUGg -5'
2917 3' -59 NC_001493.1 + 33386 0.67 0.698608
Target:  5'- cCAcCCG-GGUGACGGugcgaucguCCUCUCGGGCg -3'
miRNA:   3'- cGU-GGCaCCACUGCC---------GGGGAGUCUGg -5'
2917 3' -59 NC_001493.1 + 11105 0.67 0.698608
Target:  5'- --cCCGUGG-GACGGacgcuCacaCUCAGACCg -3'
miRNA:   3'- cguGGCACCaCUGCCg----Gg--GAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 94908 0.68 0.658956
Target:  5'- cGCACaCGguggGGUGAagaucaCGguccucaaggaGCCCCUCGGGCUg -3'
miRNA:   3'- -CGUG-GCa---CCACU------GC-----------CGGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 37680 0.73 0.402421
Target:  5'- gGCACCGUGucGGCGGCCgCCUCAaauucuuGACa -3'
miRNA:   3'- -CGUGGCACcaCUGCCGG-GGAGU-------CUGg -5'
2917 3' -59 NC_001493.1 + 90415 0.72 0.437626
Target:  5'- aGCGCCGUcGUGACGGUCUCgcucaacaCGGGCUu -3'
miRNA:   3'- -CGUGGCAcCACUGCCGGGGa-------GUCUGG- -5'
2917 3' -59 NC_001493.1 + 63584 0.72 0.450046
Target:  5'- uCGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCa -3'
miRNA:   3'- cGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 63913 0.72 0.450046
Target:  5'- uCGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- cGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 87660 0.7 0.569252
Target:  5'- cGC-CCGUGGaGcCGGCUCCUCGuacGCCg -3'
miRNA:   3'- -CGuGGCACCaCuGCCGGGGAGUc--UGG- -5'
2917 3' -59 NC_001493.1 + 8274 0.69 0.608982
Target:  5'- aGCACCGaugGGUGGgaGCCCCggcgCGGcGCCa -3'
miRNA:   3'- -CGUGGCa--CCACUgcCGGGGa---GUC-UGG- -5'
2917 3' -59 NC_001493.1 + 123828 0.69 0.608982
Target:  5'- aGCACCGaugGGUGGgaGCCCCggcgCGGcGCCa -3'
miRNA:   3'- -CGUGGCa--CCACUgcCGGGGa---GUC-UGG- -5'
2917 3' -59 NC_001493.1 + 95900 0.69 0.628973
Target:  5'- cGUACCgGUGGccGGCGGUCCgCUC-GACUa -3'
miRNA:   3'- -CGUGG-CACCa-CUGCCGGG-GAGuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.