miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2917 5' -51.1 NC_001493.1 + 128263 0.66 0.993407
Target:  5'- gGGAGUCUcccacGGggGagCC-UCAC-CGGGa -3'
miRNA:   3'- -CCUCAGG-----UCuuUagGGaAGUGaGCCC- -5'
2917 5' -51.1 NC_001493.1 + 12709 0.66 0.993407
Target:  5'- gGGAGUCUcccacGGggGagCC-UCAC-CGGGa -3'
miRNA:   3'- -CCUCAGG-----UCuuUagGGaAGUGaGCCC- -5'
2917 5' -51.1 NC_001493.1 + 77495 0.66 0.992819
Target:  5'- uGAGUCUGGGGAUCCuCUcguagaaaacgaugCugUUGGGa -3'
miRNA:   3'- cCUCAGGUCUUUAGG-GAa-------------GugAGCCC- -5'
2917 5' -51.1 NC_001493.1 + 25383 0.66 0.992404
Target:  5'- cGGAaUCCAGGuacaaCCguacaCGCUCGGGa -3'
miRNA:   3'- -CCUcAGGUCUuuag-GGaa---GUGAGCCC- -5'
2917 5' -51.1 NC_001493.1 + 34110 0.66 0.990038
Target:  5'- aGGAGUCUgccauauuuGGGGAUgCUCgggGCUCGGGa -3'
miRNA:   3'- -CCUCAGG---------UCUUUA-GGGaagUGAGCCC- -5'
2917 5' -51.1 NC_001493.1 + 114535 0.67 0.987131
Target:  5'- gGGGGUUCAGAuGGUCCgCggCACccaGGGg -3'
miRNA:   3'- -CCUCAGGUCU-UUAGG-GaaGUGag-CCC- -5'
2917 5' -51.1 NC_001493.1 + 128525 0.67 0.985274
Target:  5'- cGGGG-CCGGAcgGGUCCggUCACcacguggagaaccUCGGGa -3'
miRNA:   3'- -CCUCaGGUCU--UUAGGgaAGUG-------------AGCCC- -5'
2917 5' -51.1 NC_001493.1 + 12971 0.67 0.985274
Target:  5'- cGGGG-CCGGAcgGGUCCggUCACcacguggagaaccUCGGGa -3'
miRNA:   3'- -CCUCaGGUCU--UUAGGgaAGUG-------------AGCCC- -5'
2917 5' -51.1 NC_001493.1 + 45305 0.67 0.981596
Target:  5'- cGGA-UCCGGAGGgacaCCCUUCgACUCcGGa -3'
miRNA:   3'- -CCUcAGGUCUUUa---GGGAAG-UGAGcCC- -5'
2917 5' -51.1 NC_001493.1 + 30739 0.67 0.981596
Target:  5'- uGGGGUCCaAGGGAcUCCCUUgCGCggaacccgCGGu -3'
miRNA:   3'- -CCUCAGG-UCUUU-AGGGAA-GUGa-------GCCc -5'
2917 5' -51.1 NC_001493.1 + 111412 0.68 0.968356
Target:  5'- cGAGcCCGGGAGcCCCUguaccuaUCACaCGGGg -3'
miRNA:   3'- cCUCaGGUCUUUaGGGA-------AGUGaGCCC- -5'
2917 5' -51.1 NC_001493.1 + 49906 0.7 0.936402
Target:  5'- uGGGGUCCAGAGagacuaccagGUUCCUgaucCAgUCGGu -3'
miRNA:   3'- -CCUCAGGUCUU----------UAGGGAa---GUgAGCCc -5'
2917 5' -51.1 NC_001493.1 + 40377 0.7 0.920241
Target:  5'- aGGuGGUCac-GAGUCUCUUCAgCUCGGGg -3'
miRNA:   3'- -CC-UCAGgucUUUAGGGAAGU-GAGCCC- -5'
2917 5' -51.1 NC_001493.1 + 44015 1.14 0.004062
Target:  5'- aGGAGUCCAGAAAUCCCUUCACUCGGGa -3'
miRNA:   3'- -CCUCAGGUCUUUAGGGAAGUGAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.