miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 7862 0.68 0.867837
Target:  5'- gUAUUACCACuGCAAUGugagacGCCGUGAGCGu -3'
miRNA:   3'- -GUGGUGGUGuCGUUGU------CGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 37227 0.68 0.867102
Target:  5'- gCAUCACCgugccguagaGCAGCAcaugcacACAGCCGUuGGUGu -3'
miRNA:   3'- -GUGGUGG----------UGUCGU-------UGUCGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 70848 0.68 0.860393
Target:  5'- gGCCGCCACuaAGCAGCuaggucccGCCGUccugcAGCGa -3'
miRNA:   3'- gUGGUGGUG--UCGUUGu-------CGGCGu----UCGC- -5'
29170 5' -56 NC_006150.1 + 88802 0.68 0.860393
Target:  5'- uCGCCGuCgCAUAGcCGGCGGCUGgAGGCGa -3'
miRNA:   3'- -GUGGU-G-GUGUC-GUUGUCGGCgUUCGC- -5'
29170 5' -56 NC_006150.1 + 847 0.68 0.852749
Target:  5'- gCGCCGgCGguGUAGacgguguGGCCGCGAGCGc -3'
miRNA:   3'- -GUGGUgGUguCGUUg------UCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 182874 0.68 0.852749
Target:  5'- uCGCCACCccgaggacgacCAGCuAguGCCGCAGGUa -3'
miRNA:   3'- -GUGGUGGu----------GUCGuUguCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 47679 0.68 0.852749
Target:  5'- uCAUCAUCAuCGGCGACGGCgGCc-GCGu -3'
miRNA:   3'- -GUGGUGGU-GUCGUUGUCGgCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 203258 0.69 0.848069
Target:  5'- cCACCACCcuccccgccucaacaGCAGCcACAGCCGUc-GCc -3'
miRNA:   3'- -GUGGUGG---------------UGUCGuUGUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 91752 0.69 0.844911
Target:  5'- -uCCACCAUGGcCAGCAGCgCGUgcaugcuggGAGCGu -3'
miRNA:   3'- guGGUGGUGUC-GUUGUCG-GCG---------UUCGC- -5'
29170 5' -56 NC_006150.1 + 197290 0.69 0.844911
Target:  5'- aGCCGuauaCACAGCca-GGCUGCGAGCa -3'
miRNA:   3'- gUGGUg---GUGUCGuugUCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 203216 0.69 0.844911
Target:  5'- cCGCCuCCGCAGCAgcaACAGCaugaacaagUGCcAGCGg -3'
miRNA:   3'- -GUGGuGGUGUCGU---UGUCG---------GCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 73931 0.69 0.844911
Target:  5'- gGCCGCCGCuugcgAGuCAACGaCCGCAgAGCGg -3'
miRNA:   3'- gUGGUGGUG-----UC-GUUGUcGGCGU-UCGC- -5'
29170 5' -56 NC_006150.1 + 70194 0.69 0.844911
Target:  5'- aCACCuguCCGCGGUAccugguACcGCUGCGAGCu -3'
miRNA:   3'- -GUGGu--GGUGUCGU------UGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 120819 0.69 0.844911
Target:  5'- aCGCCgGCCGuuGUAGCugGGCCGCGAGaCGa -3'
miRNA:   3'- -GUGG-UGGUguCGUUG--UCGGCGUUC-GC- -5'
29170 5' -56 NC_006150.1 + 38444 0.69 0.836884
Target:  5'- uCACgACCAUAGCugAACcuCUGCAAGCGc -3'
miRNA:   3'- -GUGgUGGUGUCG--UUGucGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 169176 0.69 0.836884
Target:  5'- aCACCgaACCACuAGCAcCAGCCcUAGGCa -3'
miRNA:   3'- -GUGG--UGGUG-UCGUuGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 90828 0.69 0.836884
Target:  5'- gCACaCAUCACcGCGGguGCCGCAGGa- -3'
miRNA:   3'- -GUG-GUGGUGuCGUUguCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 91013 0.69 0.836884
Target:  5'- uGCCGCaACAGCAGCcuCCGCA-GCa -3'
miRNA:   3'- gUGGUGgUGUCGUUGucGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 219756 0.69 0.836884
Target:  5'- aGCgGCgGCGGCAGgaccuggcgUGGCCGCGGGUGg -3'
miRNA:   3'- gUGgUGgUGUCGUU---------GUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 63212 0.69 0.836884
Target:  5'- gCGCCucCCACGGCGGCaaaaagaaGGCCGCuGAGUu -3'
miRNA:   3'- -GUGGu-GGUGUCGUUG--------UCGGCG-UUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.