miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 106507 0.67 0.908004
Target:  5'- cCGCgGCCGCGGCuguuGCCGUcAGCu -3'
miRNA:   3'- -GUGgUGGUGUCGuuguCGGCGuUCGc -5'
29170 5' -56 NC_006150.1 + 183960 0.67 0.901865
Target:  5'- cCGCUGCCAucuuggaguaucCAGgAGCAGCCGacgAAGCGu -3'
miRNA:   3'- -GUGGUGGU------------GUCgUUGUCGGCg--UUCGC- -5'
29170 5' -56 NC_006150.1 + 114088 0.67 0.901865
Target:  5'- uGCCGCCccugagGCAcCAGCuGCCGCugcGGCGg -3'
miRNA:   3'- gUGGUGG------UGUcGUUGuCGGCGu--UCGC- -5'
29170 5' -56 NC_006150.1 + 133352 0.67 0.901865
Target:  5'- gGCCACCgacGCGGCGucaGCAuGCUGCA-GCa -3'
miRNA:   3'- gUGGUGG---UGUCGU---UGU-CGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 123213 0.67 0.895499
Target:  5'- uUugCGCCAUAGCuAUAGCgCGCGucuguauaccGGCGu -3'
miRNA:   3'- -GugGUGGUGUCGuUGUCG-GCGU----------UCGC- -5'
29170 5' -56 NC_006150.1 + 111850 0.67 0.895499
Target:  5'- aUACCAUCACguguacGGCGACcaGGCCGacgaugaAAGCGg -3'
miRNA:   3'- -GUGGUGGUG------UCGUUG--UCGGCg------UUCGC- -5'
29170 5' -56 NC_006150.1 + 96220 0.67 0.895499
Target:  5'- aGCUACCACAG-AACAGUuuucUGCGuuGGCGg -3'
miRNA:   3'- gUGGUGGUGUCgUUGUCG----GCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 95979 0.68 0.888909
Target:  5'- -uCUACUuCGGCGGCAgGCCGCGuauGCGg -3'
miRNA:   3'- guGGUGGuGUCGUUGU-CGGCGUu--CGC- -5'
29170 5' -56 NC_006150.1 + 148085 0.68 0.8821
Target:  5'- gUugCACCACGGUAcaacACAGCCacccuuugcCGAGCGc -3'
miRNA:   3'- -GugGUGGUGUCGU----UGUCGGc--------GUUCGC- -5'
29170 5' -56 NC_006150.1 + 70957 0.68 0.8821
Target:  5'- -gUCAuUCGCGGCGaguGCAGCCGCuuGCGg -3'
miRNA:   3'- guGGU-GGUGUCGU---UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 148238 0.68 0.8821
Target:  5'- gCACCAaCAuCAGCAacaACAGCagcaGCAGGCu -3'
miRNA:   3'- -GUGGUgGU-GUCGU---UGUCGg---CGUUCGc -5'
29170 5' -56 NC_006150.1 + 68445 0.68 0.8821
Target:  5'- -gUCACCGCAGCAccGCuAGCgGCGucAGCa -3'
miRNA:   3'- guGGUGGUGUCGU--UG-UCGgCGU--UCGc -5'
29170 5' -56 NC_006150.1 + 87845 0.68 0.8821
Target:  5'- gCACUcCCACAGC-ACAGCaUGCGAGg- -3'
miRNA:   3'- -GUGGuGGUGUCGuUGUCG-GCGUUCgc -5'
29170 5' -56 NC_006150.1 + 167580 0.68 0.8821
Target:  5'- aCAUCACCGCGGCGGCuGGCgGaCcAGUGu -3'
miRNA:   3'- -GUGGUGGUGUCGUUG-UCGgC-GuUCGC- -5'
29170 5' -56 NC_006150.1 + 92652 0.68 0.8821
Target:  5'- uCAUCaACCGCAGCAGaacucGCCGCcGGUGc -3'
miRNA:   3'- -GUGG-UGGUGUCGUUgu---CGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 65740 0.68 0.881407
Target:  5'- aCGCUACCgggccggACAGCGGCAGCUGgAAauGCa -3'
miRNA:   3'- -GUGGUGG-------UGUCGUUGUCGGCgUU--CGc -5'
29170 5' -56 NC_006150.1 + 119890 0.68 0.881407
Target:  5'- gAUCGCUACAGCAugGccuguuuGCCGCGGGa- -3'
miRNA:   3'- gUGGUGGUGUCGUugU-------CGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 146423 0.68 0.875074
Target:  5'- gACCGCCGCuGCAACAgagaaugagacGCCaCAGGUa -3'
miRNA:   3'- gUGGUGGUGuCGUUGU-----------CGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 125370 0.68 0.87436
Target:  5'- gUACUACCGCAGCGACccGGaccCCGUAgggagauGGCGg -3'
miRNA:   3'- -GUGGUGGUGUCGUUG--UC---GGCGU-------UCGC- -5'
29170 5' -56 NC_006150.1 + 165274 0.68 0.867837
Target:  5'- aUACCACCACuGcCAACAGCacuGCuacGGUGa -3'
miRNA:   3'- -GUGGUGGUGuC-GUUGUCGg--CGu--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.