miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 106588 0.66 0.933765
Target:  5'- uCACCccaugagcucugugGCCACucCAGCGGCCuCGAGCGu -3'
miRNA:   3'- -GUGG--------------UGGUGucGUUGUCGGcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 43809 0.66 0.930254
Target:  5'- aCGCCGCCAaacuaGGCGaagcccucgugaACAGCgCGCuAGCu -3'
miRNA:   3'- -GUGGUGGUg----UCGU------------UGUCG-GCGuUCGc -5'
29170 5' -56 NC_006150.1 + 149173 0.66 0.930254
Target:  5'- cCGCCagaGCCuCAGCAGcCGGCCGCuaacAGaCGg -3'
miRNA:   3'- -GUGG---UGGuGUCGUU-GUCGGCGu---UC-GC- -5'
29170 5' -56 NC_006150.1 + 131469 0.66 0.930254
Target:  5'- gCACUACCACAGCGAgauucuccaugUAGC-GCucuGCGa -3'
miRNA:   3'- -GUGGUGGUGUCGUU-----------GUCGgCGuu-CGC- -5'
29170 5' -56 NC_006150.1 + 170284 0.66 0.930254
Target:  5'- aGCCugCACgccGGUAucgGC-GCCGCGAGCc -3'
miRNA:   3'- gUGGugGUG---UCGU---UGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 191646 0.66 0.930254
Target:  5'- ---gACCACAGCAGCGGgccauaCGCugAGGCGg -3'
miRNA:   3'- guggUGGUGUCGUUGUCg-----GCG--UUCGC- -5'
29170 5' -56 NC_006150.1 + 152769 0.66 0.925039
Target:  5'- cCACCGCCAUccaaauccaAGuCAGC-GCCGCGuguGGCa -3'
miRNA:   3'- -GUGGUGGUG---------UC-GUUGuCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 182260 0.66 0.925039
Target:  5'- aACCGCgugaCACGGCGAcCGGCgGCGAGgCa -3'
miRNA:   3'- gUGGUG----GUGUCGUU-GUCGgCGUUC-Gc -5'
29170 5' -56 NC_006150.1 + 45849 0.66 0.924505
Target:  5'- uGCUACCACAGCGAggcauacCGGCUGCu-GUu -3'
miRNA:   3'- gUGGUGGUGUCGUU-------GUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 202926 0.66 0.922889
Target:  5'- gUugUGCaACAGCAGCAGCCGCcaccuccuccgcuGGCa -3'
miRNA:   3'- -GugGUGgUGUCGUUGUCGGCGu------------UCGc -5'
29170 5' -56 NC_006150.1 + 140655 0.67 0.919593
Target:  5'- gACCGgCACGGCcGguGCCgGCAAGaCGu -3'
miRNA:   3'- gUGGUgGUGUCGuUguCGG-CGUUC-GC- -5'
29170 5' -56 NC_006150.1 + 120274 0.67 0.919593
Target:  5'- uGCCACCuCAGCcAUuuuacccuuGGCCGCuuuAAGCGc -3'
miRNA:   3'- gUGGUGGuGUCGuUG---------UCGGCG---UUCGC- -5'
29170 5' -56 NC_006150.1 + 117371 0.67 0.919593
Target:  5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3'
miRNA:   3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 174062 0.67 0.919593
Target:  5'- -gUUugCGaGGCAcacGCGGCCGCGAGCa -3'
miRNA:   3'- guGGugGUgUCGU---UGUCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 152477 0.67 0.913914
Target:  5'- aCGCuCugCGCGGCggUGGCCGaaAAGCa -3'
miRNA:   3'- -GUG-GugGUGUCGuuGUCGGCg-UUCGc -5'
29170 5' -56 NC_006150.1 + 105598 0.67 0.912165
Target:  5'- gGCCGCC-CAGCugagccagaaacugAGcCAGCCGCAacugaguacGGCGu -3'
miRNA:   3'- gUGGUGGuGUCG--------------UU-GUCGGCGU---------UCGC- -5'
29170 5' -56 NC_006150.1 + 125234 0.67 0.911577
Target:  5'- cCACCACCuccugaaugacauCGGCAuaGCgAGCCGCGuGGCu -3'
miRNA:   3'- -GUGGUGGu------------GUCGU--UG-UCGGCGU-UCGc -5'
29170 5' -56 NC_006150.1 + 106507 0.67 0.908004
Target:  5'- cCGCgGCCGCGGCuguuGCCGUcAGCu -3'
miRNA:   3'- -GUGgUGGUGUCGuuguCGGCGuUCGc -5'
29170 5' -56 NC_006150.1 + 71086 0.67 0.908004
Target:  5'- aGCUGCUGUAGUGGCGGCCGUGgcAGCGg -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 180386 0.67 0.908004
Target:  5'- gGCCGCCaACAGCAcguGC-GCUGCGGGa- -3'
miRNA:   3'- gUGGUGG-UGUCGU---UGuCGGCGUUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.