miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 150046 0.73 0.62791
Target:  5'- gCACCGCCACuugggcuGGCAAguGUugaGCGAGCGa -3'
miRNA:   3'- -GUGGUGGUG-------UCGUUguCGg--CGUUCGC- -5'
29170 5' -56 NC_006150.1 + 2245 0.73 0.62892
Target:  5'- gGCaCACgCGCGGUu-CAGCUGCAGGCGa -3'
miRNA:   3'- gUG-GUG-GUGUCGuuGUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 154568 0.73 0.62892
Target:  5'- uCACUugCugAGCGaugagcacgGCGGCCGCGAGgGc -3'
miRNA:   3'- -GUGGugGugUCGU---------UGUCGGCGUUCgC- -5'
29170 5' -56 NC_006150.1 + 154434 0.73 0.638007
Target:  5'- aUACCACCAgcgacacCAGC-ACAGCUGCAaccAGCa -3'
miRNA:   3'- -GUGGUGGU-------GUCGuUGUCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 130278 0.73 0.639017
Target:  5'- uGCCGCCACucGCAugAGuuGCAAGg- -3'
miRNA:   3'- gUGGUGGUGu-CGUugUCggCGUUCgc -5'
29170 5' -56 NC_006150.1 + 72119 0.72 0.679273
Target:  5'- aGCCGCCGCuGUAGCAGCaGCAAcuGCu -3'
miRNA:   3'- gUGGUGGUGuCGUUGUCGgCGUU--CGc -5'
29170 5' -56 NC_006150.1 + 88670 0.72 0.679273
Target:  5'- aGCCggaACCGCGGCAgacccagcGCGGCCGUccGCGc -3'
miRNA:   3'- gUGG---UGGUGUCGU--------UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 85932 0.72 0.689263
Target:  5'- aAUCACCACuGGCGucgaACGGUCGCAcAGCGa -3'
miRNA:   3'- gUGGUGGUG-UCGU----UGUCGGCGU-UCGC- -5'
29170 5' -56 NC_006150.1 + 157632 0.71 0.699207
Target:  5'- gCACCACCcucaGCAGCAAUAGCaGCcccAGCa -3'
miRNA:   3'- -GUGGUGG----UGUCGUUGUCGgCGu--UCGc -5'
29170 5' -56 NC_006150.1 + 63916 0.71 0.709097
Target:  5'- uCACCACUcaGCAGCAagaACAGguCCaGCAGGCGc -3'
miRNA:   3'- -GUGGUGG--UGUCGU---UGUC--GG-CGUUCGC- -5'
29170 5' -56 NC_006150.1 + 118779 0.71 0.718923
Target:  5'- uCACgGCCuccgGGCAGCAGCUGCGAGg- -3'
miRNA:   3'- -GUGgUGGug--UCGUUGUCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 69402 0.71 0.738348
Target:  5'- gCACCACCACGGUGG-AGUCGCAcguccgcgccgAGCa -3'
miRNA:   3'- -GUGGUGGUGUCGUUgUCGGCGU-----------UCGc -5'
29170 5' -56 NC_006150.1 + 73694 0.71 0.738348
Target:  5'- gACuCGCa--AGCGGCGGCCGCGAcGCGg -3'
miRNA:   3'- gUG-GUGgugUCGUUGUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 124620 0.71 0.738348
Target:  5'- gCAUCACCGCaugcacaaaaagAGCAaggcgGCGGCgGCGGGCGc -3'
miRNA:   3'- -GUGGUGGUG------------UCGU-----UGUCGgCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 75525 0.71 0.738348
Target:  5'- uGCUAUCGCGGUGucACGGCCGCAgcucucauugAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGU--UGUCGGCGU----------UCGC- -5'
29170 5' -56 NC_006150.1 + 141305 0.7 0.757414
Target:  5'- cCACCugcaacauguGCCugAGCAACAgGCCGCAcuCGu -3'
miRNA:   3'- -GUGG----------UGGugUCGUUGU-CGGCGUucGC- -5'
29170 5' -56 NC_006150.1 + 187411 0.7 0.763989
Target:  5'- aAUCACCACGuucucauuagaaccGCAugAGCCGCAgagaGGCu -3'
miRNA:   3'- gUGGUGGUGU--------------CGUugUCGGCGU----UCGc -5'
29170 5' -56 NC_006150.1 + 12400 0.7 0.764924
Target:  5'- aCGCUaauGCCAaauuuauCAGCAGCAuaaaaauGCCGCAGGCa -3'
miRNA:   3'- -GUGG---UGGU-------GUCGUUGU-------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 88683 0.7 0.76679
Target:  5'- cUACUGCUuCAGCAGCAGCUGCuccuGCu -3'
miRNA:   3'- -GUGGUGGuGUCGUUGUCGGCGuu--CGc -5'
29170 5' -56 NC_006150.1 + 111914 0.7 0.76679
Target:  5'- gUACCGCCACAG-AACcuGCC-CAGGCGc -3'
miRNA:   3'- -GUGGUGGUGUCgUUGu-CGGcGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.