miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 63212 0.69 0.836884
Target:  5'- gCGCCucCCACGGCGGCaaaaagaaGGCCGCuGAGUu -3'
miRNA:   3'- -GUGGu-GGUGUCGUUG--------UCGGCG-UUCGc -5'
29170 5' -56 NC_006150.1 + 63916 0.71 0.709097
Target:  5'- uCACCACUcaGCAGCAagaACAGguCCaGCAGGCGc -3'
miRNA:   3'- -GUGGUGG--UGUCGU---UGUC--GG-CGUUCGC- -5'
29170 5' -56 NC_006150.1 + 65176 0.7 0.776049
Target:  5'- gGCC-CC-CAGCGccACGGCCGcCGAGCu -3'
miRNA:   3'- gUGGuGGuGUCGU--UGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 65740 0.68 0.881407
Target:  5'- aCGCUACCgggccggACAGCGGCAGCUGgAAauGCa -3'
miRNA:   3'- -GUGGUGG-------UGUCGUUGUCGGCgUU--CGc -5'
29170 5' -56 NC_006150.1 + 65809 0.73 0.618825
Target:  5'- gGCCACCACGGCAGa----GCGAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGUUgucggCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 68445 0.68 0.8821
Target:  5'- -gUCACCGCAGCAccGCuAGCgGCGucAGCa -3'
miRNA:   3'- guGGUGGUGUCGU--UG-UCGgCGU--UCGc -5'
29170 5' -56 NC_006150.1 + 69402 0.71 0.738348
Target:  5'- gCACCACCACGGUGG-AGUCGCAcguccgcgccgAGCa -3'
miRNA:   3'- -GUGGUGGUGUCGUUgUCGGCGU-----------UCGc -5'
29170 5' -56 NC_006150.1 + 69501 0.69 0.828676
Target:  5'- aCACCGCCuucCAGcCGAC--CCGCAGGCa -3'
miRNA:   3'- -GUGGUGGu--GUC-GUUGucGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 70052 0.74 0.558708
Target:  5'- gCGCCGCCACgAGCGcuucCAGCUGCGccgAGCGc -3'
miRNA:   3'- -GUGGUGGUG-UCGUu---GUCGGCGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 70194 0.69 0.844911
Target:  5'- aCACCuguCCGCGGUAccugguACcGCUGCGAGCu -3'
miRNA:   3'- -GUGGu--GGUGUCGU------UGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 70848 0.68 0.860393
Target:  5'- gGCCGCCACuaAGCAGCuaggucccGCCGUccugcAGCGa -3'
miRNA:   3'- gUGGUGGUG--UCGUUGu-------CGGCGu----UCGC- -5'
29170 5' -56 NC_006150.1 + 70957 0.68 0.8821
Target:  5'- -gUCAuUCGCGGCGaguGCAGCCGCuuGCGg -3'
miRNA:   3'- guGGU-GGUGUCGU---UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 71086 0.67 0.908004
Target:  5'- aGCUGCUGUAGUGGCGGCCGUGgcAGCGg -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 71225 1.1 0.003373
Target:  5'- aCACCACCACAGCAACAGCCGCAAGCGg -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 72119 0.72 0.679273
Target:  5'- aGCCGCCGCuGUAGCAGCaGCAAcuGCu -3'
miRNA:   3'- gUGGUGGUGuCGUUGUCGgCGUU--CGc -5'
29170 5' -56 NC_006150.1 + 72273 0.69 0.828676
Target:  5'- gGCgGCCuCGGCAGCGGCCaGUucuGCGa -3'
miRNA:   3'- gUGgUGGuGUCGUUGUCGG-CGuu-CGC- -5'
29170 5' -56 NC_006150.1 + 72358 0.73 0.608741
Target:  5'- uGCUGCUACAGCGGCGGCUuCAGGUa -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 73694 0.71 0.738348
Target:  5'- gACuCGCa--AGCGGCGGCCGCGAcGCGg -3'
miRNA:   3'- gUG-GUGgugUCGUUGUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 73931 0.69 0.844911
Target:  5'- gGCCGCCGCuugcgAGuCAACGaCCGCAgAGCGg -3'
miRNA:   3'- gUGGUGGUG-----UC-GUUGUcGGCGU-UCGC- -5'
29170 5' -56 NC_006150.1 + 75525 0.71 0.738348
Target:  5'- uGCUAUCGCGGUGucACGGCCGCAgcucucauugAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGU--UGUCGGCGU----------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.