miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 161 0.75 0.49087
Target:  5'- aCACaCACaCACAGCAGCagGGCCGCA-GUGa -3'
miRNA:   3'- -GUG-GUG-GUGUCGUUG--UCGGCGUuCGC- -5'
29170 5' -56 NC_006150.1 + 303 0.66 0.944504
Target:  5'- uGCCgagGCCGCGGagGACGGCUGCccgggguuGGCGg -3'
miRNA:   3'- gUGG---UGGUGUCg-UUGUCGGCGu-------UCGC- -5'
29170 5' -56 NC_006150.1 + 847 0.68 0.852749
Target:  5'- gCGCCGgCGguGUAGacgguguGGCCGCGAGCGc -3'
miRNA:   3'- -GUGGUgGUguCGUUg------UCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 2105 0.7 0.776049
Target:  5'- aGCCGCCGCuuuugauGgGGCcGUCGCGAGCGc -3'
miRNA:   3'- gUGGUGGUGu------CgUUGuCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 2167 0.7 0.785182
Target:  5'- aCAcCCGCaACGGCAcCAGCCGcCAGGCc -3'
miRNA:   3'- -GU-GGUGgUGUCGUuGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 2245 0.73 0.62892
Target:  5'- gGCaCACgCGCGGUu-CAGCUGCAGGCGa -3'
miRNA:   3'- gUG-GUG-GUGUCGuuGUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 3240 0.66 0.948794
Target:  5'- cCGCCuucCCGCcgAGCAACAGguCUGUAGGCu -3'
miRNA:   3'- -GUGGu--GGUG--UCGUUGUC--GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 7862 0.68 0.867837
Target:  5'- gUAUUACCACuGCAAUGugagacGCCGUGAGCGu -3'
miRNA:   3'- -GUGGUGGUGuCGUUGU------CGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 8087 0.66 0.948794
Target:  5'- gGCCAgCGCAGUcAguGCCGCccucgcugugAAGCa -3'
miRNA:   3'- gUGGUgGUGUCGuUguCGGCG----------UUCGc -5'
29170 5' -56 NC_006150.1 + 8530 0.66 0.948794
Target:  5'- gGCCACCACAGCGAUAaCaGCGAa-- -3'
miRNA:   3'- gUGGUGGUGUCGUUGUcGgCGUUcgc -5'
29170 5' -56 NC_006150.1 + 12400 0.7 0.764924
Target:  5'- aCGCUaauGCCAaauuuauCAGCAGCAuaaaaauGCCGCAGGCa -3'
miRNA:   3'- -GUGG---UGGU-------GUCGUUGU-------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 32479 0.66 0.935235
Target:  5'- gCAgCACCA-GGUAcCAGCCGCGAGg- -3'
miRNA:   3'- -GUgGUGGUgUCGUuGUCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 35962 0.7 0.794182
Target:  5'- gCugCACaCGCAGCugcucAGCAGCUGuCAGGUGa -3'
miRNA:   3'- -GugGUG-GUGUCG-----UUGUCGGC-GUUCGC- -5'
29170 5' -56 NC_006150.1 + 37227 0.68 0.867102
Target:  5'- gCAUCACCgugccguagaGCAGCAcaugcacACAGCCGUuGGUGu -3'
miRNA:   3'- -GUGGUGG----------UGUCGU-------UGUCGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 38444 0.69 0.836884
Target:  5'- uCACgACCAUAGCugAACcuCUGCAAGCGc -3'
miRNA:   3'- -GUGgUGGUGUCG--UUGucGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 43809 0.66 0.930254
Target:  5'- aCGCCGCCAaacuaGGCGaagcccucgugaACAGCgCGCuAGCu -3'
miRNA:   3'- -GUGGUGGUg----UCGU------------UGUCG-GCGuUCGc -5'
29170 5' -56 NC_006150.1 + 45849 0.66 0.924505
Target:  5'- uGCUACCACAGCGAggcauacCGGCUGCu-GUu -3'
miRNA:   3'- gUGGUGGUGUCGUU-------GUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 47679 0.68 0.852749
Target:  5'- uCAUCAUCAuCGGCGACGGCgGCc-GCGu -3'
miRNA:   3'- -GUGGUGGU-GUCGUUGUCGgCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 47971 0.66 0.939985
Target:  5'- cCGCguCCGgAGCGaaACAGUCGgAGGCGc -3'
miRNA:   3'- -GUGguGGUgUCGU--UGUCGGCgUUCGC- -5'
29170 5' -56 NC_006150.1 + 52715 0.74 0.558708
Target:  5'- uCGCCACgCugAGCAGCAuuGCUGUGAGUGa -3'
miRNA:   3'- -GUGGUG-GugUCGUUGU--CGGCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.