Results 1 - 20 of 140 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29170 | 5' | -56 | NC_006150.1 | + | 106379 | 0.66 | 0.948375 |
Target: 5'- gGCCugUugGGCAACAGCgucgaugCGCucuacauucagGAGCGc -3' miRNA: 3'- gUGGugGugUCGUUGUCG-------GCG-----------UUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 182260 | 0.66 | 0.925039 |
Target: 5'- aACCGCgugaCACGGCGAcCGGCgGCGAGgCa -3' miRNA: 3'- gUGGUG----GUGUCGUU-GUCGgCGUUC-Gc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 45849 | 0.66 | 0.924505 |
Target: 5'- uGCUACCACAGCGAggcauacCGGCUGCu-GUu -3' miRNA: 3'- gUGGUGGUGUCGUU-------GUCGGCGuuCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 191646 | 0.66 | 0.930254 |
Target: 5'- ---gACCACAGCAGCGGgccauaCGCugAGGCGg -3' miRNA: 3'- guggUGGUGUCGUUGUCg-----GCG--UUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 131469 | 0.66 | 0.930254 |
Target: 5'- gCACUACCACAGCGAgauucuccaugUAGC-GCucuGCGa -3' miRNA: 3'- -GUGGUGGUGUCGUU-----------GUCGgCGuu-CGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 214875 | 0.66 | 0.944504 |
Target: 5'- cUACUACgGCGGguGCuGCCGCcucGCGc -3' miRNA: 3'- -GUGGUGgUGUCguUGuCGGCGuu-CGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 32479 | 0.66 | 0.935235 |
Target: 5'- gCAgCACCA-GGUAcCAGCCGCGAGg- -3' miRNA: 3'- -GUgGUGGUgUCGUuGUCGGCGUUCgc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 202926 | 0.66 | 0.922889 |
Target: 5'- gUugUGCaACAGCAGCAGCCGCcaccuccuccgcuGGCa -3' miRNA: 3'- -GugGUGgUGUCGUUGUCGGCGu------------UCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 106588 | 0.66 | 0.933765 |
Target: 5'- uCACCccaugagcucugugGCCACucCAGCGGCCuCGAGCGu -3' miRNA: 3'- -GUGG--------------UGGUGucGUUGUCGGcGUUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 8530 | 0.66 | 0.948794 |
Target: 5'- gGCCACCACAGCGAUAaCaGCGAa-- -3' miRNA: 3'- gUGGUGGUGUCGUUGUcGgCGUUcgc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 160150 | 0.66 | 0.944504 |
Target: 5'- aUACUAcCCACGGUGcUGGCCGCcAGUGg -3' miRNA: 3'- -GUGGU-GGUGUCGUuGUCGGCGuUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 121295 | 0.66 | 0.935235 |
Target: 5'- gGCCGCUACGGCcAUuguGCCuCGAGUGu -3' miRNA: 3'- gUGGUGGUGUCGuUGu--CGGcGUUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 135932 | 0.66 | 0.939985 |
Target: 5'- gGCgGCCACAGCuGACGGUgaagagCGCcAGCa -3' miRNA: 3'- gUGgUGGUGUCG-UUGUCG------GCGuUCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 114159 | 0.66 | 0.939985 |
Target: 5'- uGCCcuGgCGCGGCAGCGGUCGCuucacauGGUGc -3' miRNA: 3'- gUGG--UgGUGUCGUUGUCGGCGu------UCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 106542 | 0.66 | 0.939985 |
Target: 5'- gGCCGaacgagUCACAGC-ACAGCCgaGCAcccAGCGa -3' miRNA: 3'- gUGGU------GGUGUCGuUGUCGG--CGU---UCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 183640 | 0.66 | 0.935235 |
Target: 5'- aACCACCGCuccCAcCAGCCucGCAuGCGg -3' miRNA: 3'- gUGGUGGUGuc-GUuGUCGG--CGUuCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 47971 | 0.66 | 0.939985 |
Target: 5'- cCGCguCCGgAGCGaaACAGUCGgAGGCGc -3' miRNA: 3'- -GUGguGGUgUCGU--UGUCGGCgUUCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 303 | 0.66 | 0.944504 |
Target: 5'- uGCCgagGCCGCGGagGACGGCUGCccgggguuGGCGg -3' miRNA: 3'- gUGG---UGGUGUCg-UUGUCGGCGu-------UCGC- -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 43809 | 0.66 | 0.930254 |
Target: 5'- aCGCCGCCAaacuaGGCGaagcccucgugaACAGCgCGCuAGCu -3' miRNA: 3'- -GUGGUGGUg----UCGU------------UGUCG-GCGuUCGc -5' |
|||||||
29170 | 5' | -56 | NC_006150.1 | + | 149173 | 0.66 | 0.930254 |
Target: 5'- cCGCCagaGCCuCAGCAGcCGGCCGCuaacAGaCGg -3' miRNA: 3'- -GUGG---UGGuGUCGUU-GUCGGCGu---UC-GC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home