Results 1 - 20 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29170 | 5' | -56 | NC_006150.1 | + | 124620 | 0.71 | 0.738348 |
Target: 5'- gCAUCACCGCaugcacaaaaagAGCAaggcgGCGGCgGCGGGCGc -3' miRNA: 3'- -GUGGUGGUG------------UCGU-----UGUCGgCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 130516 | 0.73 | 0.588629 |
Target: 5'- aGCgGCgGCAGCAGCAGCaGCA-GCGg -3' miRNA: 3'- gUGgUGgUGUCGUUGUCGgCGUuCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 65809 | 0.73 | 0.618825 |
Target: 5'- gGCCACCACGGCAGa----GCGAGCGc -3' miRNA: 3'- gUGGUGGUGUCGUUgucggCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 180909 | 0.73 | 0.618825 |
Target: 5'- gCGCgGCCACAGCGacuuGCGGuuGCGgugacGGCGg -3' miRNA: 3'- -GUGgUGGUGUCGU----UGUCggCGU-----UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 154568 | 0.73 | 0.62892 |
Target: 5'- uCACUugCugAGCGaugagcacgGCGGCCGCGAGgGc -3' miRNA: 3'- -GUGGugGugUCGU---------UGUCGGCGUUCgC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 72119 | 0.72 | 0.679273 |
Target: 5'- aGCCGCCGCuGUAGCAGCaGCAAcuGCu -3' miRNA: 3'- gUGGUGGUGuCGUUGUCGgCGUU--CGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 85932 | 0.72 | 0.689263 |
Target: 5'- aAUCACCACuGGCGucgaACGGUCGCAcAGCGa -3' miRNA: 3'- gUGGUGGUG-UCGU----UGUCGGCGU-UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 63916 | 0.71 | 0.709097 |
Target: 5'- uCACCACUcaGCAGCAagaACAGguCCaGCAGGCGc -3' miRNA: 3'- -GUGGUGG--UGUCGU---UGUC--GG-CGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 69402 | 0.71 | 0.738348 |
Target: 5'- gCACCACCACGGUGG-AGUCGCAcguccgcgccgAGCa -3' miRNA: 3'- -GUGGUGGUGUCGUUgUCGGCGU-----------UCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 170002 | 0.74 | 0.572626 |
Target: 5'- uCGCCACCAUAGCGcgucucacccacauaGCGGCuCGC-GGCGc -3' miRNA: 3'- -GUGGUGGUGUCGU---------------UGUCG-GCGuUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 70052 | 0.74 | 0.558708 |
Target: 5'- gCGCCGCCACgAGCGcuucCAGCUGCGccgAGCGc -3' miRNA: 3'- -GUGGUGGUG-UCGUu---GUCGGCGU---UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 52715 | 0.74 | 0.558708 |
Target: 5'- uCGCCACgCugAGCAGCAuuGCUGUGAGUGa -3' miRNA: 3'- -GUGGUG-GugUCGUUGU--CGGCGUUCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 180840 | 0.78 | 0.352815 |
Target: 5'- gGCgGCCugAGCAACAGCgGCGucGGCGu -3' miRNA: 3'- gUGgUGGugUCGUUGUCGgCGU--UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 196725 | 0.77 | 0.384682 |
Target: 5'- cCAgCACCACAGCcgUAGCCGUAacuAGCGu -3' miRNA: 3'- -GUgGUGGUGUCGuuGUCGGCGU---UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 113832 | 0.76 | 0.462966 |
Target: 5'- -uCCGCCGCAGCGGCAGCUGguGccucagggGCGg -3' miRNA: 3'- guGGUGGUGUCGUUGUCGGCguU--------CGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 220179 | 0.76 | 0.472177 |
Target: 5'- aGCUGCCGCAGCuGCGGCUGCGuugGGCc -3' miRNA: 3'- gUGGUGGUGUCGuUGUCGGCGU---UCGc -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 161 | 0.75 | 0.49087 |
Target: 5'- aCACaCACaCACAGCAGCagGGCCGCA-GUGa -3' miRNA: 3'- -GUG-GUG-GUGUCGUUG--UCGGCGUuCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 216402 | 0.75 | 0.49087 |
Target: 5'- aGCCGCCACGGCGAgcaacCAGUCaGCAgcAGCGa -3' miRNA: 3'- gUGGUGGUGUCGUU-----GUCGG-CGU--UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 82677 | 0.75 | 0.51953 |
Target: 5'- cUACCGCCuccccgACAGCAGgGGCCGUAaacAGCGc -3' miRNA: 3'- -GUGGUGG------UGUCGUUgUCGGCGU---UCGC- -5' |
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29170 | 5' | -56 | NC_006150.1 | + | 106255 | 0.74 | 0.538998 |
Target: 5'- gGCUcaGCUgACGGCAACAGCCGCGGccGCGg -3' miRNA: 3'- gUGG--UGG-UGUCGUUGUCGGCGUU--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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