miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 71225 1.1 0.003373
Target:  5'- aCACCACCACAGCAACAGCCGCAAGCGg -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 2105 0.7 0.776049
Target:  5'- aGCCGCCGCuuuugauGgGGCcGUCGCGAGCGc -3'
miRNA:   3'- gUGGUGGUGu------CgUUGuCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 122646 0.69 0.811747
Target:  5'- uGCCcgaGCCACGGUGACGcGCCGCuGGaCGa -3'
miRNA:   3'- gUGG---UGGUGUCGUUGU-CGGCGuUC-GC- -5'
29170 5' -56 NC_006150.1 + 8530 0.66 0.948794
Target:  5'- gGCCACCACAGCGAUAaCaGCGAa-- -3'
miRNA:   3'- gUGGUGGUGUCGUUGUcGgCGUUcgc -5'
29170 5' -56 NC_006150.1 + 72358 0.73 0.608741
Target:  5'- uGCUGCUACAGCGGCGGCUuCAGGUa -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 150046 0.73 0.62791
Target:  5'- gCACCGCCACuugggcuGGCAAguGUugaGCGAGCGa -3'
miRNA:   3'- -GUGGUGGUG-------UCGUUguCGg--CGUUCGC- -5'
29170 5' -56 NC_006150.1 + 154434 0.73 0.638007
Target:  5'- aUACCACCAgcgacacCAGC-ACAGCUGCAaccAGCa -3'
miRNA:   3'- -GUGGUGGU-------GUCGuUGUCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 130278 0.73 0.639017
Target:  5'- uGCCGCCACucGCAugAGuuGCAAGg- -3'
miRNA:   3'- gUGGUGGUGu-CGUugUCggCGUUCgc -5'
29170 5' -56 NC_006150.1 + 118779 0.71 0.718923
Target:  5'- uCACgGCCuccgGGCAGCAGCUGCGAGg- -3'
miRNA:   3'- -GUGgUGGug--UCGUUGUCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 104360 0.7 0.773284
Target:  5'- cCACCuggaauugggugcaGCCACAGCcgcgcugggAACAGCCGC-GGCc -3'
miRNA:   3'- -GUGG--------------UGGUGUCG---------UUGUCGGCGuUCGc -5'
29170 5' -56 NC_006150.1 + 141305 0.7 0.757414
Target:  5'- cCACCugcaacauguGCCugAGCAACAgGCCGCAcuCGu -3'
miRNA:   3'- -GUGG----------UGGugUCGUUGU-CGGCGUucGC- -5'
29170 5' -56 NC_006150.1 + 157632 0.71 0.699207
Target:  5'- gCACCACCcucaGCAGCAAUAGCaGCcccAGCa -3'
miRNA:   3'- -GUGGUGG----UGUCGUUGUCGgCGu--UCGc -5'
29170 5' -56 NC_006150.1 + 130725 0.8 0.281565
Target:  5'- gCACCGCCGCAGCcAUAGCCGCcugacgcauccAGGCu -3'
miRNA:   3'- -GUGGUGGUGUCGuUGUCGGCG-----------UUCGc -5'
29170 5' -56 NC_006150.1 + 12400 0.7 0.764924
Target:  5'- aCGCUaauGCCAaauuuauCAGCAGCAuaaaaauGCCGCAGGCa -3'
miRNA:   3'- -GUGG---UGGU-------GUCGUUGU-------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 131780 0.76 0.435916
Target:  5'- aCACCACCAC-GCAACGGUCGUu-GCa -3'
miRNA:   3'- -GUGGUGGUGuCGUUGUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 88670 0.72 0.679273
Target:  5'- aGCCggaACCGCGGCAgacccagcGCGGCCGUccGCGc -3'
miRNA:   3'- gUGG---UGGUGUCGU--------UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 111914 0.7 0.76679
Target:  5'- gUACCGCCACAG-AACcuGCC-CAGGCGc -3'
miRNA:   3'- -GUGGUGGUGUCgUUGu-CGGcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 113141 0.7 0.785182
Target:  5'- aACCACaGCAGCAACAGCCaCAAa-- -3'
miRNA:   3'- gUGGUGgUGUCGUUGUCGGcGUUcgc -5'
29170 5' -56 NC_006150.1 + 135777 0.73 0.588629
Target:  5'- cCACCACCGCGGCGGCA-CCau-GGCGa -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUcGGcguUCGC- -5'
29170 5' -56 NC_006150.1 + 2245 0.73 0.62892
Target:  5'- gGCaCACgCGCGGUu-CAGCUGCAGGCGa -3'
miRNA:   3'- gUG-GUG-GUGUCGuuGUCGGCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.