miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 71225 1.1 0.003373
Target:  5'- aCACCACCACAGCAACAGCCGCAAGCGg -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 102064 0.82 0.201625
Target:  5'- uCGCCGCCGCGGCAACcGCCGCAAa-- -3'
miRNA:   3'- -GUGGUGGUGUCGUUGuCGGCGUUcgc -5'
29170 5' -56 NC_006150.1 + 130725 0.8 0.281565
Target:  5'- gCACCGCCGCAGCcAUAGCCGCcugacgcauccAGGCu -3'
miRNA:   3'- -GUGGUGGUGUCGuUGUCGGCG-----------UUCGc -5'
29170 5' -56 NC_006150.1 + 180840 0.78 0.352815
Target:  5'- gGCgGCCugAGCAACAGCgGCGucGGCGu -3'
miRNA:   3'- gUGgUGGugUCGUUGUCGgCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 196725 0.77 0.384682
Target:  5'- cCAgCACCACAGCcgUAGCCGUAacuAGCGu -3'
miRNA:   3'- -GUgGUGGUGUCGuuGUCGGCGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 131780 0.76 0.435916
Target:  5'- aCACCACCAC-GCAACGGUCGUu-GCa -3'
miRNA:   3'- -GUGGUGGUGuCGUUGUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 113832 0.76 0.462966
Target:  5'- -uCCGCCGCAGCGGCAGCUGguGccucagggGCGg -3'
miRNA:   3'- guGGUGGUGUCGUUGUCGGCguU--------CGC- -5'
29170 5' -56 NC_006150.1 + 220179 0.76 0.472177
Target:  5'- aGCUGCCGCAGCuGCGGCUGCGuugGGCc -3'
miRNA:   3'- gUGGUGGUGUCGuUGUCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 161 0.75 0.49087
Target:  5'- aCACaCACaCACAGCAGCagGGCCGCA-GUGa -3'
miRNA:   3'- -GUG-GUG-GUGUCGUUG--UCGGCGUuCGC- -5'
29170 5' -56 NC_006150.1 + 216402 0.75 0.49087
Target:  5'- aGCCGCCACGGCGAgcaacCAGUCaGCAgcAGCGa -3'
miRNA:   3'- gUGGUGGUGUCGUU-----GUCGG-CGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 82677 0.75 0.51953
Target:  5'- cUACCGCCuccccgACAGCAGgGGCCGUAaacAGCGc -3'
miRNA:   3'- -GUGGUGG------UGUCGUUgUCGGCGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 106255 0.74 0.538998
Target:  5'- gGCUcaGCUgACGGCAACAGCCGCGGccGCGg -3'
miRNA:   3'- gUGG--UGG-UGUCGUUGUCGGCGUU--CGC- -5'
29170 5' -56 NC_006150.1 + 70052 0.74 0.558708
Target:  5'- gCGCCGCCACgAGCGcuucCAGCUGCGccgAGCGc -3'
miRNA:   3'- -GUGGUGGUG-UCGUu---GUCGGCGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 52715 0.74 0.558708
Target:  5'- uCGCCACgCugAGCAGCAuuGCUGUGAGUGa -3'
miRNA:   3'- -GUGGUG-GugUCGUUGU--CGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 170002 0.74 0.572626
Target:  5'- uCGCCACCAUAGCGcgucucacccacauaGCGGCuCGC-GGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGU---------------UGUCG-GCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 135777 0.73 0.588629
Target:  5'- cCACCACCGCGGCGGCA-CCau-GGCGa -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUcGGcguUCGC- -5'
29170 5' -56 NC_006150.1 + 130516 0.73 0.588629
Target:  5'- aGCgGCgGCAGCAGCAGCaGCA-GCGg -3'
miRNA:   3'- gUGgUGgUGUCGUUGUCGgCGUuCGC- -5'
29170 5' -56 NC_006150.1 + 72358 0.73 0.608741
Target:  5'- uGCUGCUACAGCGGCGGCUuCAGGUa -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 65809 0.73 0.618825
Target:  5'- gGCCACCACGGCAGa----GCGAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGUUgucggCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 180909 0.73 0.618825
Target:  5'- gCGCgGCCACAGCGacuuGCGGuuGCGgugacGGCGg -3'
miRNA:   3'- -GUGgUGGUGUCGU----UGUCggCGU-----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.