miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 106542 0.66 0.939985
Target:  5'- gGCCGaacgagUCACAGC-ACAGCCgaGCAcccAGCGa -3'
miRNA:   3'- gUGGU------GGUGUCGuUGUCGG--CGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 3240 0.66 0.948794
Target:  5'- cCGCCuucCCGCcgAGCAACAGguCUGUAGGCu -3'
miRNA:   3'- -GUGGu--GGUG--UCGUUGUC--GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 139397 0.66 0.948794
Target:  5'- cCGCCGCCugGGguACgggagGGCauCAGGCGa -3'
miRNA:   3'- -GUGGUGGugUCguUG-----UCGgcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 102333 0.66 0.943172
Target:  5'- cCACCGCCAgaacuauaaaucucCuuuGCGGCGguuGCCGCGgcGGCGa -3'
miRNA:   3'- -GUGGUGGU--------------Gu--CGUUGU---CGGCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 8530 0.66 0.948794
Target:  5'- gGCCACCACAGCGAUAaCaGCGAa-- -3'
miRNA:   3'- gUGGUGGUGUCGUUGUcGgCGUUcgc -5'
29170 5' -56 NC_006150.1 + 160150 0.66 0.944504
Target:  5'- aUACUAcCCACGGUGcUGGCCGCcAGUGg -3'
miRNA:   3'- -GUGGU-GGUGUCGUuGUCGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 181486 0.66 0.948794
Target:  5'- gCACCACgACAacaaCGACAGCgCGCucAGUGg -3'
miRNA:   3'- -GUGGUGgUGUc---GUUGUCG-GCGu-UCGC- -5'
29170 5' -56 NC_006150.1 + 84626 0.66 0.948794
Target:  5'- --aCACgUAUGGCAACAugucccGCCGCAAGCc -3'
miRNA:   3'- gugGUG-GUGUCGUUGU------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 170284 0.66 0.930254
Target:  5'- aGCCugCACgccGGUAucgGC-GCCGCGAGCc -3'
miRNA:   3'- gUGGugGUG---UCGU---UGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 152769 0.66 0.925039
Target:  5'- cCACCGCCAUccaaauccaAGuCAGC-GCCGCGuguGGCa -3'
miRNA:   3'- -GUGGUGGUG---------UC-GUUGuCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 183960 0.67 0.901865
Target:  5'- cCGCUGCCAucuuggaguaucCAGgAGCAGCCGacgAAGCGu -3'
miRNA:   3'- -GUGGUGGU------------GUCgUUGUCGGCg--UUCGC- -5'
29170 5' -56 NC_006150.1 + 120274 0.67 0.919593
Target:  5'- uGCCACCuCAGCcAUuuuacccuuGGCCGCuuuAAGCGc -3'
miRNA:   3'- gUGGUGGuGUCGuUG---------UCGGCG---UUCGC- -5'
29170 5' -56 NC_006150.1 + 117371 0.67 0.919593
Target:  5'- gACgAUCAUAGCGAUcauaguguAGCUGUggGCGa -3'
miRNA:   3'- gUGgUGGUGUCGUUG--------UCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 106507 0.67 0.908004
Target:  5'- cCGCgGCCGCGGCuguuGCCGUcAGCu -3'
miRNA:   3'- -GUGgUGGUGUCGuuguCGGCGuUCGc -5'
29170 5' -56 NC_006150.1 + 96220 0.67 0.895499
Target:  5'- aGCUACCACAG-AACAGUuuucUGCGuuGGCGg -3'
miRNA:   3'- gUGGUGGUGUCgUUGUCG----GCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 114088 0.67 0.901865
Target:  5'- uGCCGCCccugagGCAcCAGCuGCCGCugcGGCGg -3'
miRNA:   3'- gUGGUGG------UGUcGUUGuCGGCGu--UCGC- -5'
29170 5' -56 NC_006150.1 + 125234 0.67 0.911577
Target:  5'- cCACCACCuccugaaugacauCGGCAuaGCgAGCCGCGuGGCu -3'
miRNA:   3'- -GUGGUGGu------------GUCGU--UG-UCGGCGU-UCGc -5'
29170 5' -56 NC_006150.1 + 157589 0.67 0.908004
Target:  5'- cCACCACaC-CAGCGGCAGCaccaguaGCAccaAGCc -3'
miRNA:   3'- -GUGGUG-GuGUCGUUGUCGg------CGU---UCGc -5'
29170 5' -56 NC_006150.1 + 105598 0.67 0.912165
Target:  5'- gGCCGCC-CAGCugagccagaaacugAGcCAGCCGCAacugaguacGGCGu -3'
miRNA:   3'- gUGGUGGuGUCG--------------UU-GUCGGCGU---------UCGC- -5'
29170 5' -56 NC_006150.1 + 71086 0.67 0.908004
Target:  5'- aGCUGCUGUAGUGGCGGCCGUGgcAGCGg -3'
miRNA:   3'- gUGGUGGUGUCGUUGUCGGCGU--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.