miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 220428 0.69 0.828676
Target:  5'- gGCCcaaCGCAGCcGCAGCUGCGgcAGCu -3'
miRNA:   3'- gUGGug-GUGUCGuUGUCGGCGU--UCGc -5'
29170 5' -56 NC_006150.1 + 220179 0.76 0.472177
Target:  5'- aGCUGCCGCAGCuGCGGCUGCGuugGGCc -3'
miRNA:   3'- gUGGUGGUGUCGuUGUCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 219756 0.69 0.836884
Target:  5'- aGCgGCgGCGGCAGgaccuggcgUGGCCGCGGGUGg -3'
miRNA:   3'- gUGgUGgUGUCGUU---------GUCGGCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 216402 0.75 0.49087
Target:  5'- aGCCGCCACGGCGAgcaacCAGUCaGCAgcAGCGa -3'
miRNA:   3'- gUGGUGGUGUCGUU-----GUCGG-CGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 214875 0.66 0.944504
Target:  5'- cUACUACgGCGGguGCuGCCGCcucGCGc -3'
miRNA:   3'- -GUGGUGgUGUCguUGuCGGCGuu-CGC- -5'
29170 5' -56 NC_006150.1 + 213156 0.7 0.776049
Target:  5'- uGCUuuuACUACAGCAGCAaacacuaCCGCAAGCa -3'
miRNA:   3'- gUGG---UGGUGUCGUUGUc------GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 203258 0.69 0.848069
Target:  5'- cCACCACCcuccccgccucaacaGCAGCcACAGCCGUc-GCc -3'
miRNA:   3'- -GUGGUGG---------------UGUCGuUGUCGGCGuuCGc -5'
29170 5' -56 NC_006150.1 + 203216 0.69 0.844911
Target:  5'- cCGCCuCCGCAGCAgcaACAGCaugaacaagUGCcAGCGg -3'
miRNA:   3'- -GUGGuGGUGUCGU---UGUCG---------GCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 202926 0.66 0.922889
Target:  5'- gUugUGCaACAGCAGCAGCCGCcaccuccuccgcuGGCa -3'
miRNA:   3'- -GugGUGgUGUCGUUGUCGGCGu------------UCGc -5'
29170 5' -56 NC_006150.1 + 197290 0.69 0.844911
Target:  5'- aGCCGuauaCACAGCca-GGCUGCGAGCa -3'
miRNA:   3'- gUGGUg---GUGUCGuugUCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 196725 0.77 0.384682
Target:  5'- cCAgCACCACAGCcgUAGCCGUAacuAGCGu -3'
miRNA:   3'- -GUgGUGGUGUCGuuGUCGGCGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 191646 0.66 0.930254
Target:  5'- ---gACCACAGCAGCGGgccauaCGCugAGGCGg -3'
miRNA:   3'- guggUGGUGUCGUUGUCg-----GCG--UUCGC- -5'
29170 5' -56 NC_006150.1 + 187411 0.7 0.763989
Target:  5'- aAUCACCACGuucucauuagaaccGCAugAGCCGCAgagaGGCu -3'
miRNA:   3'- gUGGUGGUGU--------------CGUugUCGGCGU----UCGc -5'
29170 5' -56 NC_006150.1 + 183960 0.67 0.901865
Target:  5'- cCGCUGCCAucuuggaguaucCAGgAGCAGCCGacgAAGCGu -3'
miRNA:   3'- -GUGGUGGU------------GUCgUUGUCGGCg--UUCGC- -5'
29170 5' -56 NC_006150.1 + 183640 0.66 0.935235
Target:  5'- aACCACCGCuccCAcCAGCCucGCAuGCGg -3'
miRNA:   3'- gUGGUGGUGuc-GUuGUCGG--CGUuCGC- -5'
29170 5' -56 NC_006150.1 + 182874 0.68 0.852749
Target:  5'- uCGCCACCccgaggacgacCAGCuAguGCCGCAGGUa -3'
miRNA:   3'- -GUGGUGGu----------GUCGuUguCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 182260 0.66 0.925039
Target:  5'- aACCGCgugaCACGGCGAcCGGCgGCGAGgCa -3'
miRNA:   3'- gUGGUG----GUGUCGUU-GUCGgCGUUC-Gc -5'
29170 5' -56 NC_006150.1 + 181486 0.66 0.948794
Target:  5'- gCACCACgACAacaaCGACAGCgCGCucAGUGg -3'
miRNA:   3'- -GUGGUGgUGUc---GUUGUCG-GCGu-UCGC- -5'
29170 5' -56 NC_006150.1 + 180909 0.73 0.618825
Target:  5'- gCGCgGCCACAGCGacuuGCGGuuGCGgugacGGCGg -3'
miRNA:   3'- -GUGgUGGUGUCGU----UGUCggCGU-----UCGC- -5'
29170 5' -56 NC_006150.1 + 180840 0.78 0.352815
Target:  5'- gGCgGCCugAGCAACAGCgGCGucGGCGu -3'
miRNA:   3'- gUGgUGGugUCGUUGUCGgCGU--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.