miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 76828 0.7 0.80304
Target:  5'- gCGCCACuCAUAGC-GguGCCGCA-GCa -3'
miRNA:   3'- -GUGGUG-GUGUCGuUguCGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 82677 0.75 0.51953
Target:  5'- cUACCGCCuccccgACAGCAGgGGCCGUAaacAGCGc -3'
miRNA:   3'- -GUGGUGG------UGUCGUUgUCGGCGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 84626 0.66 0.948794
Target:  5'- --aCACgUAUGGCAACAugucccGCCGCAAGCc -3'
miRNA:   3'- gugGUG-GUGUCGUUGU------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 85932 0.72 0.689263
Target:  5'- aAUCACCACuGGCGucgaACGGUCGCAcAGCGa -3'
miRNA:   3'- gUGGUGGUG-UCGU----UGUCGGCGU-UCGC- -5'
29170 5' -56 NC_006150.1 + 87845 0.68 0.8821
Target:  5'- gCACUcCCACAGC-ACAGCaUGCGAGg- -3'
miRNA:   3'- -GUGGuGGUGUCGuUGUCG-GCGUUCgc -5'
29170 5' -56 NC_006150.1 + 88670 0.72 0.679273
Target:  5'- aGCCggaACCGCGGCAgacccagcGCGGCCGUccGCGc -3'
miRNA:   3'- gUGG---UGGUGUCGU--------UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 88683 0.7 0.76679
Target:  5'- cUACUGCUuCAGCAGCAGCUGCuccuGCu -3'
miRNA:   3'- -GUGGUGGuGUCGUUGUCGGCGuu--CGc -5'
29170 5' -56 NC_006150.1 + 88802 0.68 0.860393
Target:  5'- uCGCCGuCgCAUAGcCGGCGGCUGgAGGCGa -3'
miRNA:   3'- -GUGGU-G-GUGUC-GUUGUCGGCgUUCGC- -5'
29170 5' -56 NC_006150.1 + 89588 0.7 0.80304
Target:  5'- uCACUGCCACAGCcgucgacgauCGGUCGCGGuGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGuu--------GUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 90828 0.69 0.836884
Target:  5'- gCACaCAUCACcGCGGguGCCGCAGGa- -3'
miRNA:   3'- -GUG-GUGGUGuCGUUguCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 91013 0.69 0.836884
Target:  5'- uGCCGCaACAGCAGCcuCCGCA-GCa -3'
miRNA:   3'- gUGGUGgUGUCGUUGucGGCGUuCGc -5'
29170 5' -56 NC_006150.1 + 91752 0.69 0.844911
Target:  5'- -uCCACCAUGGcCAGCAGCgCGUgcaugcuggGAGCGu -3'
miRNA:   3'- guGGUGGUGUC-GUUGUCG-GCG---------UUCGC- -5'
29170 5' -56 NC_006150.1 + 92652 0.68 0.8821
Target:  5'- uCAUCaACCGCAGCAGaacucGCCGCcGGUGc -3'
miRNA:   3'- -GUGG-UGGUGUCGUUgu---CGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 95979 0.68 0.888909
Target:  5'- -uCUACUuCGGCGGCAgGCCGCGuauGCGg -3'
miRNA:   3'- guGGUGGuGUCGUUGU-CGGCGUu--CGC- -5'
29170 5' -56 NC_006150.1 + 96220 0.67 0.895499
Target:  5'- aGCUACCACAG-AACAGUuuucUGCGuuGGCGg -3'
miRNA:   3'- gUGGUGGUGUCgUUGUCG----GCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 102064 0.82 0.201625
Target:  5'- uCGCCGCCGCGGCAACcGCCGCAAa-- -3'
miRNA:   3'- -GUGGUGGUGUCGUUGuCGGCGUUcgc -5'
29170 5' -56 NC_006150.1 + 102333 0.66 0.943172
Target:  5'- cCACCGCCAgaacuauaaaucucCuuuGCGGCGguuGCCGCGgcGGCGa -3'
miRNA:   3'- -GUGGUGGU--------------Gu--CGUUGU---CGGCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 104360 0.7 0.773284
Target:  5'- cCACCuggaauugggugcaGCCACAGCcgcgcugggAACAGCCGC-GGCc -3'
miRNA:   3'- -GUGG--------------UGGUGUCG---------UUGUCGGCGuUCGc -5'
29170 5' -56 NC_006150.1 + 105598 0.67 0.912165
Target:  5'- gGCCGCC-CAGCugagccagaaacugAGcCAGCCGCAacugaguacGGCGu -3'
miRNA:   3'- gUGGUGGuGUCG--------------UU-GUCGGCGU---------UCGC- -5'
29170 5' -56 NC_006150.1 + 106255 0.74 0.538998
Target:  5'- gGCUcaGCUgACGGCAACAGCCGCGGccGCGg -3'
miRNA:   3'- gUGG--UGG-UGUCGUUGUCGGCGUU--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.