miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29172 5' -53.7 NC_006150.1 + 49853 0.66 0.986917
Target:  5'- aUACGAg-CCGauauccaGGAGaUGCAUGCUGCg -3'
miRNA:   3'- aGUGCUagGGCa------CUUC-GCGUACGACG- -5'
29172 5' -53.7 NC_006150.1 + 45648 0.66 0.986917
Target:  5'- uUCACGAUgUCG-GAGGgGUcuacuugGCUGCg -3'
miRNA:   3'- -AGUGCUAgGGCaCUUCgCGua-----CGACG- -5'
29172 5' -53.7 NC_006150.1 + 199102 0.66 0.985277
Target:  5'- aUUACGccuUCUCGgGAGGCGCAUuaUGUu -3'
miRNA:   3'- -AGUGCu--AGGGCaCUUCGCGUAcgACG- -5'
29172 5' -53.7 NC_006150.1 + 29482 0.66 0.981533
Target:  5'- -uGCGggCCCGgGGAGCGUacAUGCcgaGCg -3'
miRNA:   3'- agUGCuaGGGCaCUUCGCG--UACGa--CG- -5'
29172 5' -53.7 NC_006150.1 + 216091 0.66 0.979412
Target:  5'- -uGCGGUCgauggCUGUGggGCGUcaGCUGUc -3'
miRNA:   3'- agUGCUAG-----GGCACuuCGCGuaCGACG- -5'
29172 5' -53.7 NC_006150.1 + 130674 0.66 0.979412
Target:  5'- uUUugGAacgUCUGaGggGCGCAgGCUGCc -3'
miRNA:   3'- -AGugCUa--GGGCaCuuCGCGUaCGACG- -5'
29172 5' -53.7 NC_006150.1 + 49584 0.66 0.979412
Target:  5'- gCGCGAaucUCCCGUc--GCGCA-GCaUGCa -3'
miRNA:   3'- aGUGCU---AGGGCAcuuCGCGUaCG-ACG- -5'
29172 5' -53.7 NC_006150.1 + 135976 0.66 0.979412
Target:  5'- -gGCGuagCuCCGUGcuGGCacGCGUGCUGCu -3'
miRNA:   3'- agUGCua-G-GGCACu-UCG--CGUACGACG- -5'
29172 5' -53.7 NC_006150.1 + 155655 0.67 0.977117
Target:  5'- -gACcuGUCCCuGUGGuacuguguGUGCGUGCUGCu -3'
miRNA:   3'- agUGc-UAGGG-CACUu-------CGCGUACGACG- -5'
29172 5' -53.7 NC_006150.1 + 88577 0.67 0.977117
Target:  5'- gUCGCGAggCCCagcUGggGUGCAgggGC-GCg -3'
miRNA:   3'- -AGUGCUa-GGGc--ACuuCGCGUa--CGaCG- -5'
29172 5' -53.7 NC_006150.1 + 148204 0.67 0.977117
Target:  5'- -gACGggCCCGUGccGAGCGgCAUGaacGCa -3'
miRNA:   3'- agUGCuaGGGCAC--UUCGC-GUACga-CG- -5'
29172 5' -53.7 NC_006150.1 + 168967 0.67 0.974638
Target:  5'- cCAUGAgccacCCCG-GAGG-GaCAUGCUGCu -3'
miRNA:   3'- aGUGCUa----GGGCaCUUCgC-GUACGACG- -5'
29172 5' -53.7 NC_006150.1 + 145251 0.67 0.974638
Target:  5'- uUCGCGAUCgaG-GAgucuGGC-CGUGCUGCu -3'
miRNA:   3'- -AGUGCUAGggCaCU----UCGcGUACGACG- -5'
29172 5' -53.7 NC_006150.1 + 67960 0.67 0.971969
Target:  5'- gUUAgGAUCCUggGUGuucGGCGUuccgguGUGCUGCg -3'
miRNA:   3'- -AGUgCUAGGG--CACu--UCGCG------UACGACG- -5'
29172 5' -53.7 NC_006150.1 + 213430 0.67 0.970847
Target:  5'- gUUACGAUgCUgGUGAGGCuGCuugcgguaguguuUGCUGCu -3'
miRNA:   3'- -AGUGCUA-GGgCACUUCG-CGu------------ACGACG- -5'
29172 5' -53.7 NC_006150.1 + 102946 0.67 0.966036
Target:  5'- uUCugGGUUgaCGUGcaucAGCGCucUGCUGCu -3'
miRNA:   3'- -AGugCUAGg-GCACu---UCGCGu-ACGACG- -5'
29172 5' -53.7 NC_006150.1 + 104142 0.67 0.962759
Target:  5'- cCACGAUgCCGcaGAAGCcCAUGUUGg -3'
miRNA:   3'- aGUGCUAgGGCa-CUUCGcGUACGACg -5'
29172 5' -53.7 NC_006150.1 + 75600 0.68 0.959268
Target:  5'- cUCAUGGUCUCGcGAAcCGCucgccGCUGCg -3'
miRNA:   3'- -AGUGCUAGGGCaCUUcGCGua---CGACG- -5'
29172 5' -53.7 NC_006150.1 + 82217 0.69 0.938461
Target:  5'- aCGCGAUCCUGUccccGGAGaGCggGCUGg -3'
miRNA:   3'- aGUGCUAGGGCA----CUUCgCGuaCGACg -5'
29172 5' -53.7 NC_006150.1 + 107533 0.69 0.928519
Target:  5'- gUCAguUGAgcaggCCCGaGAAGCGCcgGCgGCg -3'
miRNA:   3'- -AGU--GCUa----GGGCaCUUCGCGuaCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.