miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29173 5' -54.1 NC_006150.1 + 2089 0.72 0.819384
Target:  5'- gGGGCCGUCGCGAGCgc------GCGCu -3'
miRNA:   3'- -CCUGGUAGCGCUCGaguaguucCGCG- -5'
29173 5' -54.1 NC_006150.1 + 8885 0.68 0.948043
Target:  5'- --cCCAaaaG-GAGCUCcUCAAGGCGCg -3'
miRNA:   3'- ccuGGUag-CgCUCGAGuAGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 46369 0.66 0.981599
Target:  5'- cGACCAacaagUgGCGGuGCUCAUCGgaaaacaaguccGGGCGa -3'
miRNA:   3'- cCUGGU-----AgCGCU-CGAGUAGU------------UCCGCg -5'
29173 5' -54.1 NC_006150.1 + 48890 0.67 0.970491
Target:  5'- uGGugCGUUGCGuGGCUCGuauaguguguguuaaUCAauugcucgGGGUGCu -3'
miRNA:   3'- -CCugGUAGCGC-UCGAGU---------------AGU--------UCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 55626 0.7 0.907095
Target:  5'- uGGACCAcaguguggUCaGCGAGCUCAUUAAG-UGg -3'
miRNA:   3'- -CCUGGU--------AG-CGCUCGAGUAGUUCcGCg -5'
29173 5' -54.1 NC_006150.1 + 75221 0.69 0.934414
Target:  5'- uGACUuuaGaCGAGCUCAagaugCAGGGCGUg -3'
miRNA:   3'- cCUGGuagC-GCUCGAGUa----GUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 77702 0.71 0.859446
Target:  5'- uGGACaAUCG-GGGCUCAUUAaacauaagacuGGGCGUg -3'
miRNA:   3'- -CCUGgUAGCgCUCGAGUAGU-----------UCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 78296 0.71 0.859446
Target:  5'- uGGCCAUCG-GAGCU-GUCGGuGGUGCu -3'
miRNA:   3'- cCUGGUAGCgCUCGAgUAGUU-CCGCG- -5'
29173 5' -54.1 NC_006150.1 + 85309 1.14 0.003168
Target:  5'- cGGACCAUCGCGAGCUCAUCAAGGCGCu -3'
miRNA:   3'- -CCUGGUAGCGCUCGAGUAGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 85900 0.69 0.924178
Target:  5'- uGAuCCAcCGUGAGCccCAUCAAgagcGGCGCa -3'
miRNA:   3'- cCU-GGUaGCGCUCGa-GUAGUU----CCGCG- -5'
29173 5' -54.1 NC_006150.1 + 88583 0.69 0.929411
Target:  5'- gGGGgCGUCGCGAgGCcCAgcuGGGGUGCa -3'
miRNA:   3'- -CCUgGUAGCGCU-CGaGUag-UUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 88754 0.68 0.952134
Target:  5'- cGAuCCAgcacugCGUccaGGGCUCGUCGGGGCaGCc -3'
miRNA:   3'- cCU-GGUa-----GCG---CUCGAGUAGUUCCG-CG- -5'
29173 5' -54.1 NC_006150.1 + 105997 0.68 0.948043
Target:  5'- cGGCCuccUCGgGAGcCUCGUCGuaGCGCa -3'
miRNA:   3'- cCUGGu--AGCgCUC-GAGUAGUucCGCG- -5'
29173 5' -54.1 NC_006150.1 + 106706 0.66 0.983529
Target:  5'- gGGGCCAgucggcaCGCGAccGaCUCggCGGGaGCGCg -3'
miRNA:   3'- -CCUGGUa------GCGCU--C-GAGuaGUUC-CGCG- -5'
29173 5' -54.1 NC_006150.1 + 106882 0.66 0.981599
Target:  5'- uGGGCCAgUGCcaagGAcGCUUGagAGGGCGCg -3'
miRNA:   3'- -CCUGGUaGCG----CU-CGAGUagUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 109188 0.71 0.866889
Target:  5'- cGGGCUguGUUGCGuGCagA-CGAGGCGCa -3'
miRNA:   3'- -CCUGG--UAGCGCuCGagUaGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 119526 0.67 0.974793
Target:  5'- uGGACgCGgagCGCGuucGCggCGUCuuuGGCGCg -3'
miRNA:   3'- -CCUG-GUa--GCGCu--CGa-GUAGuu-CCGCG- -5'
29173 5' -54.1 NC_006150.1 + 128277 0.71 0.859446
Target:  5'- gGGG--GUCGCGAuacaGCUCgGUCAGGGCGUc -3'
miRNA:   3'- -CCUggUAGCGCU----CGAG-UAGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 129614 0.66 0.983529
Target:  5'- aGGCUGUgCGUGGacGCUUcgUggGGCGCg -3'
miRNA:   3'- cCUGGUA-GCGCU--CGAGuaGuuCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 135538 0.66 0.985301
Target:  5'- uGGuGCCGcCGCGguGGUggaCGUCGAGGCGg -3'
miRNA:   3'- -CC-UGGUaGCGC--UCGa--GUAGUUCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.