miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29173 5' -54.1 NC_006150.1 + 148759 0.73 0.756636
Target:  5'- gGGACCGaggCGgGAGCUgAugcuggggUCAGGGCGUc -3'
miRNA:   3'- -CCUGGUa--GCgCUCGAgU--------AGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 165122 0.66 0.985301
Target:  5'- cGAUCAcCGUGGuGCUCAUUuuccuuauAGGUGCa -3'
miRNA:   3'- cCUGGUaGCGCU-CGAGUAGu-------UCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 135538 0.66 0.985301
Target:  5'- uGGuGCCGcCGCGguGGUggaCGUCGAGGCGg -3'
miRNA:   3'- -CC-UGGUaGCGC--UCGa--GUAGUUCCGCg -5'
29173 5' -54.1 NC_006150.1 + 129614 0.66 0.983529
Target:  5'- aGGCUGUgCGUGGacGCUUcgUggGGCGCg -3'
miRNA:   3'- cCUGGUA-GCGCU--CGAGuaGuuCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 106706 0.66 0.983529
Target:  5'- gGGGCCAgucggcaCGCGAccGaCUCggCGGGaGCGCg -3'
miRNA:   3'- -CCUGGUa------GCGCU--C-GAGuaGUUC-CGCG- -5'
29173 5' -54.1 NC_006150.1 + 119526 0.67 0.974793
Target:  5'- uGGACgCGgagCGCGuucGCggCGUCuuuGGCGCg -3'
miRNA:   3'- -CCUG-GUa--GCGCu--CGa-GUAGuu-CCGCG- -5'
29173 5' -54.1 NC_006150.1 + 219768 0.67 0.969338
Target:  5'- aGGACCuggcguggcCGCGGGUggaaCGUCcgaggcGGGCGCg -3'
miRNA:   3'- -CCUGGua-------GCGCUCGa---GUAGu-----UCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 144914 0.67 0.966315
Target:  5'- --uUCAUCGCGgaccGGC-CG-CGAGGCGCa -3'
miRNA:   3'- ccuGGUAGCGC----UCGaGUaGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 85900 0.69 0.924178
Target:  5'- uGAuCCAcCGUGAGCccCAUCAAgagcGGCGCa -3'
miRNA:   3'- cCU-GGUaGCGCUCGa-GUAGUU----CCGCG- -5'
29173 5' -54.1 NC_006150.1 + 109188 0.71 0.866889
Target:  5'- cGGGCUguGUUGCGuGCagA-CGAGGCGCa -3'
miRNA:   3'- -CCUGG--UAGCGCuCGagUaGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 128277 0.71 0.859446
Target:  5'- gGGG--GUCGCGAuacaGCUCgGUCAGGGCGUc -3'
miRNA:   3'- -CCUggUAGCGCU----CGAG-UAGUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 135892 0.72 0.827754
Target:  5'- cGGAUC--UGCGAGUcgugCAUCGAGGCGg -3'
miRNA:   3'- -CCUGGuaGCGCUCGa---GUAGUUCCGCg -5'
29173 5' -54.1 NC_006150.1 + 169361 0.72 0.793318
Target:  5'- cGGGCCAacaUCGauCGGGCUCGgacggagggCAAGGCGg -3'
miRNA:   3'- -CCUGGU---AGC--GCUCGAGUa--------GUUCCGCg -5'
29173 5' -54.1 NC_006150.1 + 55626 0.7 0.907095
Target:  5'- uGGACCAcaguguggUCaGCGAGCUCAUUAAG-UGg -3'
miRNA:   3'- -CCUGGU--------AG-CGCUCGAGUAGUUCcGCg -5'
29173 5' -54.1 NC_006150.1 + 183514 0.7 0.881157
Target:  5'- cGGAUUcugCGUGGGCUCcggugCGGGGUGCg -3'
miRNA:   3'- -CCUGGua-GCGCUCGAGua---GUUCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 77702 0.71 0.859446
Target:  5'- uGGACaAUCG-GGGCUCAUUAaacauaagacuGGGCGUg -3'
miRNA:   3'- -CCUGgUAGCgCUCGAGUAGU-----------UCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 78296 0.71 0.859446
Target:  5'- uGGCCAUCG-GAGCU-GUCGGuGGUGCu -3'
miRNA:   3'- cCUGGUAGCgCUCGAgUAGUU-CCGCG- -5'
29173 5' -54.1 NC_006150.1 + 2089 0.72 0.819384
Target:  5'- gGGGCCGUCGCGAGCgc------GCGCu -3'
miRNA:   3'- -CCUGGUAGCGCUCGaguaguucCGCG- -5'
29173 5' -54.1 NC_006150.1 + 216237 0.75 0.658716
Target:  5'- cGACCGUCGUG-GCUCG-CGaaaacAGGCGCc -3'
miRNA:   3'- cCUGGUAGCGCuCGAGUaGU-----UCCGCG- -5'
29173 5' -54.1 NC_006150.1 + 46369 0.66 0.981599
Target:  5'- cGACCAacaagUgGCGGuGCUCAUCGgaaaacaaguccGGGCGa -3'
miRNA:   3'- cCUGGU-----AgCGCU-CGAGUAGU------------UCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.