miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29176 3' -66.5 NC_006150.1 + 102349 0.66 0.57459
Target:  5'- aGGCG-GCGCUUCggGCCCaCCGCCAGa- -3'
miRNA:   3'- -UCGCgUGCGAGG--CGGGgGGCGGUCcc -5'
29176 3' -66.5 NC_006150.1 + 1847 0.66 0.556285
Target:  5'- cAGCGCGCGCUCgcgacgGCCCCaucaaaagcggCgGCUGGGa -3'
miRNA:   3'- -UCGCGUGCGAGg-----CGGGG-----------GgCGGUCCc -5'
29176 3' -66.5 NC_006150.1 + 206388 0.66 0.538153
Target:  5'- uGCGCGCGCUCC-UCCCCCaUCAa-- -3'
miRNA:   3'- uCGCGUGCGAGGcGGGGGGcGGUccc -5'
29176 3' -66.5 NC_006150.1 + 125649 0.66 0.529162
Target:  5'- aAGCGCgaaacgugGCGCgCCGCCaucuCCCuaCGGGGu -3'
miRNA:   3'- -UCGCG--------UGCGaGGCGGg---GGGcgGUCCC- -5'
29176 3' -66.5 NC_006150.1 + 182090 0.67 0.511352
Target:  5'- aGGCGaaCAUGUUCgGCCCgaaCCCGCUGGGc -3'
miRNA:   3'- -UCGC--GUGCGAGgCGGG---GGGCGGUCCc -5'
29176 3' -66.5 NC_006150.1 + 204911 0.67 0.502541
Target:  5'- -aCGgaGCGUUuuGaCCCUCGCCAGGGg -3'
miRNA:   3'- ucGCg-UGCGAggCgGGGGGCGGUCCC- -5'
29176 3' -66.5 NC_006150.1 + 88183 0.67 0.502541
Target:  5'- gGGcCGCGCGCccCCGCCCuucugggcggCCCuCUGGGGg -3'
miRNA:   3'- -UC-GCGUGCGa-GGCGGG----------GGGcGGUCCC- -5'
29176 3' -66.5 NC_006150.1 + 106395 0.67 0.467996
Target:  5'- cGUGCccCGuCUCCGCCCCaCGCUgcaaAGGGc -3'
miRNA:   3'- uCGCGu-GC-GAGGCGGGGgGCGG----UCCC- -5'
29176 3' -66.5 NC_006150.1 + 150241 0.67 0.459551
Target:  5'- gAGCGCcagcggggugGCGUUCgGCaCCCUGCCcGGGc -3'
miRNA:   3'- -UCGCG----------UGCGAGgCGgGGGGCGGuCCC- -5'
29176 3' -66.5 NC_006150.1 + 88457 0.67 0.458711
Target:  5'- cGCGCAUgGCUaCGCCCCcagagggCCGCCcagaAGGGc -3'
miRNA:   3'- uCGCGUG-CGAgGCGGGG-------GGCGG----UCCC- -5'
29176 3' -66.5 NC_006150.1 + 115173 0.68 0.418594
Target:  5'- gGGCGaUGCGCUCUGCcaacuaCCCCCGCUcuuuucGGGc -3'
miRNA:   3'- -UCGC-GUGCGAGGCG------GGGGGCGGu-----CCC- -5'
29176 3' -66.5 NC_006150.1 + 758 0.68 0.410672
Target:  5'- uGGCGCuCGCUgCGCCgCCUagCGUCAGGc -3'
miRNA:   3'- -UCGCGuGCGAgGCGG-GGG--GCGGUCCc -5'
29176 3' -66.5 NC_006150.1 + 130583 0.69 0.387473
Target:  5'- aAGCGCACcaCUCCGCcuuCCCCCGCUg--- -3'
miRNA:   3'- -UCGCGUGc-GAGGCG---GGGGGCGGuccc -5'
29176 3' -66.5 NC_006150.1 + 88273 0.69 0.379934
Target:  5'- uAGCGCcaGCGgaacgCCGCCCCaucccccaggCgGCCAGGGg -3'
miRNA:   3'- -UCGCG--UGCga---GGCGGGG----------GgCGGUCCC- -5'
29176 3' -66.5 NC_006150.1 + 33156 0.69 0.365154
Target:  5'- cGCGCcgaccGCGCUCCG-CCUCCGCUucGGa -3'
miRNA:   3'- uCGCG-----UGCGAGGCgGGGGGCGGucCC- -5'
29176 3' -66.5 NC_006150.1 + 149585 0.7 0.350775
Target:  5'- aGGCgGUACGCUUCuCCUCCgGCUGGGGc -3'
miRNA:   3'- -UCG-CGUGCGAGGcGGGGGgCGGUCCC- -5'
29176 3' -66.5 NC_006150.1 + 85683 0.7 0.343738
Target:  5'- cGGUGgGCGCUCgGCCCUCC-UCAGGc -3'
miRNA:   3'- -UCGCgUGCGAGgCGGGGGGcGGUCCc -5'
29176 3' -66.5 NC_006150.1 + 129282 0.7 0.323242
Target:  5'- -aCGUACGCUCCGCCucugCCCCGacugCAGGc -3'
miRNA:   3'- ucGCGUGCGAGGCGG----GGGGCg---GUCCc -5'
29176 3' -66.5 NC_006150.1 + 82671 0.7 0.316615
Target:  5'- --aGUugGCUaCCGCCuCCCCGacagCAGGGg -3'
miRNA:   3'- ucgCGugCGA-GGCGG-GGGGCg---GUCCC- -5'
29176 3' -66.5 NC_006150.1 + 62095 0.71 0.291137
Target:  5'- uGCGCACGCaucgguccguaUCCGCCauaCCCGCUucGGc -3'
miRNA:   3'- uCGCGUGCG-----------AGGCGGg--GGGCGGucCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.