miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29185 3' -58.1 NC_006150.1 + 119625 0.66 0.908671
Target:  5'- gCCuguuACUGggGCCCGUCGCcGuGCccuGCUa -3'
miRNA:   3'- -GGu---UGGCuuCGGGCGGCGaC-UGu--CGA- -5'
29185 3' -58.1 NC_006150.1 + 1277 0.66 0.902713
Target:  5'- gCGACUGGAGCaCCGCCGaacacGAaucCGGCa -3'
miRNA:   3'- gGUUGGCUUCG-GGCGGCga---CU---GUCGa -5'
29185 3' -58.1 NC_006150.1 + 114087 0.66 0.902713
Target:  5'- gCCGcccCUGAGGCaccagCUGCCGCUG-CGGCg -3'
miRNA:   3'- -GGUu--GGCUUCG-----GGCGGCGACuGUCGa -5'
29185 3' -58.1 NC_006150.1 + 136215 0.66 0.902713
Target:  5'- gCCAGCaCGGAGCUaCGCCgguccagacucuGCUGGC-GCUc -3'
miRNA:   3'- -GGUUG-GCUUCGG-GCGG------------CGACUGuCGA- -5'
29185 3' -58.1 NC_006150.1 + 88418 0.66 0.902713
Target:  5'- aCGGCCGcgcuGGGUCUGCCGCgGuucCGGCUc -3'
miRNA:   3'- gGUUGGC----UUCGGGCGGCGaCu--GUCGA- -5'
29185 3' -58.1 NC_006150.1 + 130723 0.66 0.89654
Target:  5'- aCC-GCCGcAGCCauaGCCGCcUGAC-GCa -3'
miRNA:   3'- -GGuUGGCuUCGGg--CGGCG-ACUGuCGa -5'
29185 3' -58.1 NC_006150.1 + 181097 0.66 0.890154
Target:  5'- uCCGAgCGAcGCCgaCGCCGCUGuu-GCUc -3'
miRNA:   3'- -GGUUgGCUuCGG--GCGGCGACuguCGA- -5'
29185 3' -58.1 NC_006150.1 + 167910 0.66 0.876756
Target:  5'- aCGACCauGggGCCUGCacaguaCUGAUGGCUa -3'
miRNA:   3'- gGUUGG--CuuCGGGCGgc----GACUGUCGA- -5'
29185 3' -58.1 NC_006150.1 + 220117 0.66 0.876756
Target:  5'- cCCAGUCGGgaacacacucGGCUCGCCGCcuaucaaGGCAGCa -3'
miRNA:   3'- -GGUUGGCU----------UCGGGCGGCGa------CUGUCGa -5'
29185 3' -58.1 NC_006150.1 + 191902 0.67 0.862551
Target:  5'- aCCuACCGccucagcguauGGCCCGCUGCUGugGuCUa -3'
miRNA:   3'- -GGuUGGCu----------UCGGGCGGCGACugUcGA- -5'
29185 3' -58.1 NC_006150.1 + 88792 0.67 0.860352
Target:  5'- gCGGCCGAugucgccgucgcauAGCCgGCgGCUGGaGGCg -3'
miRNA:   3'- gGUUGGCU--------------UCGGgCGgCGACUgUCGa -5'
29185 3' -58.1 NC_006150.1 + 193551 0.67 0.831879
Target:  5'- aCAGCCGGucugAGUCUGCUGUUcACGGCa -3'
miRNA:   3'- gGUUGGCU----UCGGGCGGCGAcUGUCGa -5'
29185 3' -58.1 NC_006150.1 + 133046 0.68 0.823775
Target:  5'- aCCGGgCGAcGCCC-CCGCUcGAgAGCg -3'
miRNA:   3'- -GGUUgGCUuCGGGcGGCGA-CUgUCGa -5'
29185 3' -58.1 NC_006150.1 + 169599 0.68 0.81551
Target:  5'- cCCGAUCGAuguuGGCCCG-UGCUGcaACAGUa -3'
miRNA:   3'- -GGUUGGCU----UCGGGCgGCGAC--UGUCGa -5'
29185 3' -58.1 NC_006150.1 + 48550 0.68 0.81551
Target:  5'- cCCAaaACgGAGGCCgaUGUCGUUGugGGCa -3'
miRNA:   3'- -GGU--UGgCUUCGG--GCGGCGACugUCGa -5'
29185 3' -58.1 NC_006150.1 + 126780 0.68 0.81551
Target:  5'- gCGACCGcgaacGAGCCacaaGCCGCucUGACuGCa -3'
miRNA:   3'- gGUUGGC-----UUCGGg---CGGCG--ACUGuCGa -5'
29185 3' -58.1 NC_006150.1 + 88514 0.68 0.81551
Target:  5'- cCCAGCCGAGcgcacgcuccGCCCcCCGCcagGGCuGCg -3'
miRNA:   3'- -GGUUGGCUU----------CGGGcGGCGa--CUGuCGa -5'
29185 3' -58.1 NC_006150.1 + 43293 0.68 0.81551
Target:  5'- aCAugUGu-GCUCGCCGagUGACAGCa -3'
miRNA:   3'- gGUugGCuuCGGGCGGCg-ACUGUCGa -5'
29185 3' -58.1 NC_006150.1 + 54338 0.68 0.78982
Target:  5'- -aAACUGggGCCCGuCCGUU-ACAGUUu -3'
miRNA:   3'- ggUUGGCuuCGGGC-GGCGAcUGUCGA- -5'
29185 3' -58.1 NC_006150.1 + 90868 0.68 0.78982
Target:  5'- uCguACCGAGaauuGCCUGCUGCUGugguuGCGGCg -3'
miRNA:   3'- -GguUGGCUU----CGGGCGGCGAC-----UGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.