miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29194 5' -48.5 NC_006150.1 + 188400 0.65 0.999834
Target:  5'- aAGAAGCGCUCGAggcagguggUAGCAGUacaucuuaggagaCCGCGg- -3'
miRNA:   3'- -UUUUCGUGAGCU---------GUUGUCA-------------GGUGUac -5'
29194 5' -48.5 NC_006150.1 + 102385 0.66 0.999735
Target:  5'- ---uGCAgCUUGACcGCGGUCCgaacGCGUGa -3'
miRNA:   3'- uuuuCGU-GAGCUGuUGUCAGG----UGUAC- -5'
29194 5' -48.5 NC_006150.1 + 124293 0.66 0.999729
Target:  5'- cGAGGCcuaugacGCUCGGCAACGcccgcgucagguGUCUACAUa -3'
miRNA:   3'- uUUUCG-------UGAGCUGUUGU------------CAGGUGUAc -5'
29194 5' -48.5 NC_006150.1 + 4497 0.66 0.999665
Target:  5'- ---uGCACuuuucguagguUCGAUAACAGU-CACAUGa -3'
miRNA:   3'- uuuuCGUG-----------AGCUGUUGUCAgGUGUAC- -5'
29194 5' -48.5 NC_006150.1 + 111704 0.66 0.999665
Target:  5'- ---cGUcCUCGGCGGCAucGUCCAcCAUGa -3'
miRNA:   3'- uuuuCGuGAGCUGUUGU--CAGGU-GUAC- -5'
29194 5' -48.5 NC_006150.1 + 51813 0.66 0.999665
Target:  5'- cAAGAGCACcCG-C-GCAGUUCACAUa -3'
miRNA:   3'- -UUUUCGUGaGCuGuUGUCAGGUGUAc -5'
29194 5' -48.5 NC_006150.1 + 191167 0.66 0.999578
Target:  5'- uAGGAGCACUCaGACAACAgguuGUUCAgGg- -3'
miRNA:   3'- -UUUUCGUGAG-CUGUUGU----CAGGUgUac -5'
29194 5' -48.5 NC_006150.1 + 52589 0.66 0.999578
Target:  5'- cAAAGUACgcCGGCAuACAGUCgACAUa -3'
miRNA:   3'- uUUUCGUGa-GCUGU-UGUCAGgUGUAc -5'
29194 5' -48.5 NC_006150.1 + 115568 0.67 0.999473
Target:  5'- aGGAGGUACUCGuCGAUGGUCUuaaACAa- -3'
miRNA:   3'- -UUUUCGUGAGCuGUUGUCAGG---UGUac -5'
29194 5' -48.5 NC_006150.1 + 111073 0.68 0.998536
Target:  5'- -cGAGUGCUuuugcgacUGACAGCugccugcagGGUCCACAUGa -3'
miRNA:   3'- uuUUCGUGA--------GCUGUUG---------UCAGGUGUAC- -5'
29194 5' -48.5 NC_006150.1 + 201438 0.68 0.998234
Target:  5'- ---cGCACUCGucCAACAGaauuauUCCACAg- -3'
miRNA:   3'- uuuuCGUGAGCu-GUUGUC------AGGUGUac -5'
29194 5' -48.5 NC_006150.1 + 40833 0.68 0.998234
Target:  5'- gAAAGGCGCuucuUCGAcCAGCAGUaaCGCAUGu -3'
miRNA:   3'- -UUUUCGUG----AGCU-GUUGUCAg-GUGUAC- -5'
29194 5' -48.5 NC_006150.1 + 149214 0.68 0.997882
Target:  5'- aGGAGGgGCUCGgccccGCAACGGUUCcCGUGg -3'
miRNA:   3'- -UUUUCgUGAGC-----UGUUGUCAGGuGUAC- -5'
29194 5' -48.5 NC_006150.1 + 137831 0.68 0.997473
Target:  5'- gAGAGGCGCggcaGGCGGCGGaaCGCGUGa -3'
miRNA:   3'- -UUUUCGUGag--CUGUUGUCagGUGUAC- -5'
29194 5' -48.5 NC_006150.1 + 114110 0.69 0.996457
Target:  5'- uGGAGGuCGCUgGGCugaaAGUCCACGUGc -3'
miRNA:   3'- -UUUUC-GUGAgCUGuug-UCAGGUGUAC- -5'
29194 5' -48.5 NC_006150.1 + 35316 0.7 0.986999
Target:  5'- aAAAGGCGCcuugcggCGACAACGGUUgGCGUu -3'
miRNA:   3'- -UUUUCGUGa------GCUGUUGUCAGgUGUAc -5'
29194 5' -48.5 NC_006150.1 + 72338 0.73 0.944411
Target:  5'- -cAGGUACUUGACGAgGGUgCGCGUGc -3'
miRNA:   3'- uuUUCGUGAGCUGUUgUCAgGUGUAC- -5'
29194 5' -48.5 NC_006150.1 + 137478 0.74 0.934546
Target:  5'- ----aCACUCGACcACGGUCCGCAc- -3'
miRNA:   3'- uuuucGUGAGCUGuUGUCAGGUGUac -5'
29194 5' -48.5 NC_006150.1 + 111305 1.08 0.022172
Target:  5'- cAAAAGCACUCGACAACAGUCCACAUGg -3'
miRNA:   3'- -UUUUCGUGAGCUGUUGUCAGGUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.