miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29197 5' -43.8 NC_006150.1 + 105288 0.67 1
Target:  5'- --aGUCGAC-ACGAGAUgGGCAuuuuCACu -3'
miRNA:   3'- aaaCAGUUGcUGUUCUAaUCGUu---GUG- -5'
29197 5' -43.8 NC_006150.1 + 152750 0.67 1
Target:  5'- --aGUCAGCGccGCGug--UGGCAACGCc -3'
miRNA:   3'- aaaCAGUUGC--UGUucuaAUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 41419 0.67 1
Target:  5'- --aGUCuucguACGGC-AGGUUGGCGAC-Ca -3'
miRNA:   3'- aaaCAGu----UGCUGuUCUAAUCGUUGuG- -5'
29197 5' -43.8 NC_006150.1 + 166767 0.66 1
Target:  5'- ---aUUAACGGCAGGcgaaUAGCAACAg -3'
miRNA:   3'- aaacAGUUGCUGUUCua--AUCGUUGUg -5'
29197 5' -43.8 NC_006150.1 + 131859 0.66 1
Target:  5'- --gGUCGAaaGGCAGGGUgaUAGCAcucGCGCa -3'
miRNA:   3'- aaaCAGUUg-CUGUUCUA--AUCGU---UGUG- -5'
29197 5' -43.8 NC_006150.1 + 1214 0.68 0.999999
Target:  5'- -gUGUUGugGAgAGGGUUGGguGCAg -3'
miRNA:   3'- aaACAGUugCUgUUCUAAUCguUGUg -5'
29197 5' -43.8 NC_006150.1 + 209822 0.68 0.999997
Target:  5'- --cGUUucACGACGAGcacgcugAGCAGCACa -3'
miRNA:   3'- aaaCAGu-UGCUGUUCuaa----UCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 140235 0.68 0.999997
Target:  5'- -aUGUCAAguccaagccUGcCGAGAUUGcGCAACGCg -3'
miRNA:   3'- aaACAGUU---------GCuGUUCUAAU-CGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 70153 0.7 0.999933
Target:  5'- ---cUCAACGACGAGGUUcGCGcuCACa -3'
miRNA:   3'- aaacAGUUGCUGUUCUAAuCGUu-GUG- -5'
29197 5' -43.8 NC_006150.1 + 217363 0.7 0.999933
Target:  5'- --gGUUAuUGGCAAGA--AGCGACACg -3'
miRNA:   3'- aaaCAGUuGCUGUUCUaaUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 88362 0.71 0.999801
Target:  5'- gUUGUCGAgGGgGAGGg-GGCGGCGCa -3'
miRNA:   3'- aAACAGUUgCUgUUCUaaUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 113994 1.08 0.065221
Target:  5'- cUUUGUCAACGACAAGAUUAGCAACACc -3'
miRNA:   3'- -AAACAGUUGCUGUUCUAAUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 27121 0.66 1
Target:  5'- --cGUCuGCGAUAcucgUGGCGGCACu -3'
miRNA:   3'- aaaCAGuUGCUGUucuaAUCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.