Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29197 | 5' | -43.8 | NC_006150.1 | + | 113759 | 0.78 | 0.962262 |
Target: 5'- cUUGUCGuUGACAAGGUuaaauccggcaggugUAGCGACACg -3' miRNA: 3'- aAACAGUuGCUGUUCUA---------------AUCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 112330 | 0.67 | 1 |
Target: 5'- --cGUCGGCGACcguGGU--GCGGCGCu -3' miRNA: 3'- aaaCAGUUGCUGuu-CUAauCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 113996 | 0.67 | 1 |
Target: 5'- -aUGUCugaGuCGGGGUUGGCGACGg -3' miRNA: 3'- aaACAGuugCuGUUCUAAUCGUUGUg -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 69311 | 0.66 | 1 |
Target: 5'- -cUGUCu-CGAUAcucuccGGAcUGGCAGCGCg -3' miRNA: 3'- aaACAGuuGCUGU------UCUaAUCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 109347 | 0.66 | 1 |
Target: 5'- -gUGUCAAUGACGuGAUccGCAaAUACa -3' miRNA: 3'- aaACAGUUGCUGUuCUAauCGU-UGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 72710 | 0.66 | 1 |
Target: 5'- --aGUCAuggGCGACGAGAU-GGUAccguACGCc -3' miRNA: 3'- aaaCAGU---UGCUGUUCUAaUCGU----UGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 115444 | 0.66 | 1 |
Target: 5'- --gGUCGugGA-GAGAaugGGCAGCGCc -3' miRNA: 3'- aaaCAGUugCUgUUCUaa-UCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 56455 | 0.66 | 1 |
Target: 5'- --cGUCGACGAUgcGAUcccgGGCGGCcCa -3' miRNA: 3'- aaaCAGUUGCUGuuCUAa---UCGUUGuG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 181511 | 0.65 | 1 |
Target: 5'- gUUGUCcgauacggcagagAAgGACGAGAUUaaGGCGuACACa -3' miRNA: 3'- aAACAG-------------UUgCUGUUCUAA--UCGU-UGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 35325 | 0.67 | 1 |
Target: 5'- cUUG-CGGCGACAAcGGUUGGCGuuguUACu -3' miRNA: 3'- aAACaGUUGCUGUU-CUAAUCGUu---GUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 219758 | 0.67 | 0.999999 |
Target: 5'- --cGgCGGCGGCAGGAccUGGCGugGCc -3' miRNA: 3'- aaaCaGUUGCUGUUCUa-AUCGUugUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 196706 | 0.68 | 0.999999 |
Target: 5'- -aUGUCAACacACAAG-UUAGcCAGCACc -3' miRNA: 3'- aaACAGUUGc-UGUUCuAAUC-GUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 32927 | 0.74 | 0.996823 |
Target: 5'- --gGUCGGCGGCGGGGaugGGCAGuCGCa -3' miRNA: 3'- aaaCAGUUGCUGUUCUaa-UCGUU-GUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 19408 | 0.71 | 0.999911 |
Target: 5'- --aGUCAGCaACAAGAc--GCGGCACa -3' miRNA: 3'- aaaCAGUUGcUGUUCUaauCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 174636 | 0.7 | 0.999933 |
Target: 5'- ---cUCGACGGCAGauuGAUgAGCAGCGCc -3' miRNA: 3'- aaacAGUUGCUGUU---CUAaUCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 36871 | 0.7 | 0.999951 |
Target: 5'- --aGUCAGCGACAAacucgaaAGCGGCAUg -3' miRNA: 3'- aaaCAGUUGCUGUUcuaa---UCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 110683 | 0.69 | 0.99999 |
Target: 5'- --gGUCGGCGgguACGAGGUgucugAGCGGCAg -3' miRNA: 3'- aaaCAGUUGC---UGUUCUAa----UCGUUGUg -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 207921 | 0.69 | 0.99999 |
Target: 5'- --aGgcgUAACGAUAGGAUUGGCGuaACAUc -3' miRNA: 3'- aaaCa--GUUGCUGUUCUAAUCGU--UGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 27931 | 0.68 | 0.999997 |
Target: 5'- ---aUCGGCGGCGuuaagauacagAGAUUAGCAACu- -3' miRNA: 3'- aaacAGUUGCUGU-----------UCUAAUCGUUGug -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 70545 | 0.68 | 0.999997 |
Target: 5'- cUUGUCggUGACaAAGAguuGCAggGCGCa -3' miRNA: 3'- aAACAGuuGCUG-UUCUaauCGU--UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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