miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29197 5' -43.8 NC_006150.1 + 1214 0.68 0.999999
Target:  5'- -gUGUUGugGAgAGGGUUGGguGCAg -3'
miRNA:   3'- aaACAGUugCUgUUCUAAUCguUGUg -5'
29197 5' -43.8 NC_006150.1 + 19408 0.71 0.999911
Target:  5'- --aGUCAGCaACAAGAc--GCGGCACa -3'
miRNA:   3'- aaaCAGUUGcUGUUCUaauCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 27121 0.66 1
Target:  5'- --cGUCuGCGAUAcucgUGGCGGCACu -3'
miRNA:   3'- aaaCAGuUGCUGUucuaAUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 27931 0.68 0.999997
Target:  5'- ---aUCGGCGGCGuuaagauacagAGAUUAGCAACu- -3'
miRNA:   3'- aaacAGUUGCUGU-----------UCUAAUCGUUGug -5'
29197 5' -43.8 NC_006150.1 + 32927 0.74 0.996823
Target:  5'- --gGUCGGCGGCGGGGaugGGCAGuCGCa -3'
miRNA:   3'- aaaCAGUUGCUGUUCUaa-UCGUU-GUG- -5'
29197 5' -43.8 NC_006150.1 + 35325 0.67 1
Target:  5'- cUUG-CGGCGACAAcGGUUGGCGuuguUACu -3'
miRNA:   3'- aAACaGUUGCUGUU-CUAAUCGUu---GUG- -5'
29197 5' -43.8 NC_006150.1 + 36871 0.7 0.999951
Target:  5'- --aGUCAGCGACAAacucgaaAGCGGCAUg -3'
miRNA:   3'- aaaCAGUUGCUGUUcuaa---UCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 41419 0.67 1
Target:  5'- --aGUCuucguACGGC-AGGUUGGCGAC-Ca -3'
miRNA:   3'- aaaCAGu----UGCUGuUCUAAUCGUUGuG- -5'
29197 5' -43.8 NC_006150.1 + 56455 0.66 1
Target:  5'- --cGUCGACGAUgcGAUcccgGGCGGCcCa -3'
miRNA:   3'- aaaCAGUUGCUGuuCUAa---UCGUUGuG- -5'
29197 5' -43.8 NC_006150.1 + 69311 0.66 1
Target:  5'- -cUGUCu-CGAUAcucuccGGAcUGGCAGCGCg -3'
miRNA:   3'- aaACAGuuGCUGU------UCUaAUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 70153 0.7 0.999933
Target:  5'- ---cUCAACGACGAGGUUcGCGcuCACa -3'
miRNA:   3'- aaacAGUUGCUGUUCUAAuCGUu-GUG- -5'
29197 5' -43.8 NC_006150.1 + 70545 0.68 0.999997
Target:  5'- cUUGUCggUGACaAAGAguuGCAggGCGCa -3'
miRNA:   3'- aAACAGuuGCUG-UUCUaauCGU--UGUG- -5'
29197 5' -43.8 NC_006150.1 + 72710 0.66 1
Target:  5'- --aGUCAuggGCGACGAGAU-GGUAccguACGCc -3'
miRNA:   3'- aaaCAGU---UGCUGUUCUAaUCGU----UGUG- -5'
29197 5' -43.8 NC_006150.1 + 88362 0.71 0.999801
Target:  5'- gUUGUCGAgGGgGAGGg-GGCGGCGCa -3'
miRNA:   3'- aAACAGUUgCUgUUCUaaUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 105288 0.67 1
Target:  5'- --aGUCGAC-ACGAGAUgGGCAuuuuCACu -3'
miRNA:   3'- aaaCAGUUGcUGUUCUAaUCGUu---GUG- -5'
29197 5' -43.8 NC_006150.1 + 109347 0.66 1
Target:  5'- -gUGUCAAUGACGuGAUccGCAaAUACa -3'
miRNA:   3'- aaACAGUUGCUGUuCUAauCGU-UGUG- -5'
29197 5' -43.8 NC_006150.1 + 110683 0.69 0.99999
Target:  5'- --gGUCGGCGgguACGAGGUgucugAGCGGCAg -3'
miRNA:   3'- aaaCAGUUGC---UGUUCUAa----UCGUUGUg -5'
29197 5' -43.8 NC_006150.1 + 112330 0.67 1
Target:  5'- --cGUCGGCGACcguGGU--GCGGCGCu -3'
miRNA:   3'- aaaCAGUUGCUGuu-CUAauCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 113759 0.78 0.962262
Target:  5'- cUUGUCGuUGACAAGGUuaaauccggcaggugUAGCGACACg -3'
miRNA:   3'- aAACAGUuGCUGUUCUA---------------AUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 113994 1.08 0.065221
Target:  5'- cUUUGUCAACGACAAGAUUAGCAACACc -3'
miRNA:   3'- -AAACAGUUGCUGUUCUAAUCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.