miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2920 5' -55.4 NC_001493.1 + 62328 0.66 0.931132
Target:  5'- cGGGggCU--AUCAGUggguUCUccGGCGGGGg -3'
miRNA:   3'- -CCCuaGAgcUAGUCGu---AGA--CCGCCCC- -5'
2920 5' -55.4 NC_001493.1 + 90818 0.66 0.914665
Target:  5'- cGGGAggucugCUCGAaCGGCcUCUcgacucggagccGGCGGGc -3'
miRNA:   3'- -CCCUa-----GAGCUaGUCGuAGA------------CCGCCCc -5'
2920 5' -55.4 NC_001493.1 + 58068 0.66 0.914665
Target:  5'- cGGAUCgu-AUCGGCAUCgGGCaugugagcgucGGGGu -3'
miRNA:   3'- cCCUAGagcUAGUCGUAGaCCG-----------CCCC- -5'
2920 5' -55.4 NC_001493.1 + 112826 0.66 0.911114
Target:  5'- gGGGAUCUCGggC-GCAggcucgacgcgaacuUCUgGGUGaGGGa -3'
miRNA:   3'- -CCCUAGAGCuaGuCGU---------------AGA-CCGC-CCC- -5'
2920 5' -55.4 NC_001493.1 + 94698 0.67 0.896062
Target:  5'- uGGGAUCUCGA--AGUAUauccCGGGGa -3'
miRNA:   3'- -CCCUAGAGCUagUCGUAgaccGCCCC- -5'
2920 5' -55.4 NC_001493.1 + 15897 0.67 0.882504
Target:  5'- aGGGAcucCUgGAUCAGCcgUUccaGGuCGGGGa -3'
miRNA:   3'- -CCCUa--GAgCUAGUCGuaGA---CC-GCCCC- -5'
2920 5' -55.4 NC_001493.1 + 131451 0.67 0.882504
Target:  5'- aGGGAcucCUgGAUCAGCcgUUccaGGuCGGGGa -3'
miRNA:   3'- -CCCUa--GAgCUAGUCGuaGA---CC-GCCCC- -5'
2920 5' -55.4 NC_001493.1 + 88008 0.68 0.83666
Target:  5'- uGGAgga-GAUCAGCGggUGGCGGuGGg -3'
miRNA:   3'- cCCUagagCUAGUCGUagACCGCC-CC- -5'
2920 5' -55.4 NC_001493.1 + 57792 0.68 0.828329
Target:  5'- cGGGAUCaccCGGuUCAGUAUCgagggGGCGuuGGGu -3'
miRNA:   3'- -CCCUAGa--GCU-AGUCGUAGa----CCGC--CCC- -5'
2920 5' -55.4 NC_001493.1 + 30513 0.68 0.819818
Target:  5'- uGGGAaaucUCUCGAcgaacUCGGgGccCUGGuCGGGGg -3'
miRNA:   3'- -CCCU----AGAGCU-----AGUCgUa-GACC-GCCCC- -5'
2920 5' -55.4 NC_001493.1 + 105165 0.69 0.811137
Target:  5'- cGGGAcCUUGAUUuuuGUGUCUGGUGGa- -3'
miRNA:   3'- -CCCUaGAGCUAGu--CGUAGACCGCCcc -5'
2920 5' -55.4 NC_001493.1 + 86562 0.69 0.811137
Target:  5'- -cGAUCUCGGUCAGUAugaggucucUCUcGGCcGGGu -3'
miRNA:   3'- ccCUAGAGCUAGUCGU---------AGA-CCGcCCC- -5'
2920 5' -55.4 NC_001493.1 + 37506 0.7 0.769241
Target:  5'- uGGGcCUCGAUCGgcugcugguacuugcGCAUgUGcGCGGGGa -3'
miRNA:   3'- cCCUaGAGCUAGU---------------CGUAgAC-CGCCCC- -5'
2920 5' -55.4 NC_001493.1 + 52182 0.75 0.485756
Target:  5'- cGGGGUggUGuguGUCAGCAUUcacaUGGCGGGGg -3'
miRNA:   3'- -CCCUAgaGC---UAGUCGUAG----ACCGCCCC- -5'
2920 5' -55.4 NC_001493.1 + 46949 1.14 0.00158
Target:  5'- cGGGAUCUCGAUCAGCAUCUGGCGGGGg -3'
miRNA:   3'- -CCCUAGAGCUAGUCGUAGACCGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.