miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29201 5' -57.6 NC_006150.1 + 221403 0.66 0.908342
Target:  5'- cGCccugGGGAGGaaaGCUGCCUgccguacgUCUC-CCg -3'
miRNA:   3'- aCG----UCCUCCg--CGACGGGua------AGAGaGG- -5'
29201 5' -57.6 NC_006150.1 + 975 0.66 0.896027
Target:  5'- cGCGGGccGGGgGaagucccuuuCUGCCCGU-CUCUCa -3'
miRNA:   3'- aCGUCC--UCCgC----------GACGGGUAaGAGAGg -5'
29201 5' -57.6 NC_006150.1 + 206894 0.66 0.889541
Target:  5'- aGguGGAGGcCGCUcacaacuuuugGCgCcgUCUCUCa -3'
miRNA:   3'- aCguCCUCC-GCGA-----------CGgGuaAGAGAGg -5'
29201 5' -57.6 NC_006150.1 + 28395 0.67 0.868808
Target:  5'- uUGguGGAGGCGCUGgCC-UUUgacaUCg -3'
miRNA:   3'- -ACguCCUCCGCGACgGGuAAGag--AGg -5'
29201 5' -57.6 NC_006150.1 + 132807 0.67 0.861488
Target:  5'- aGCGGG-GGCGUcGCCCGgua--UCCa -3'
miRNA:   3'- aCGUCCuCCGCGaCGGGUaagagAGG- -5'
29201 5' -57.6 NC_006150.1 + 102008 0.67 0.847043
Target:  5'- gGC-GGAGGCGCUGCUCAaacaacagugcgaagUCgaUCCg -3'
miRNA:   3'- aCGuCCUCCGCGACGGGUa--------------AGagAGG- -5'
29201 5' -57.6 NC_006150.1 + 125203 0.68 0.830302
Target:  5'- aGCGGGAGgacGCGCUGCUCAagCagaugcgUUCCg -3'
miRNA:   3'- aCGUCCUC---CGCGACGGGUaaGa------GAGG- -5'
29201 5' -57.6 NC_006150.1 + 169466 0.68 0.822061
Target:  5'- cGCAcuGGuGGCGCUGCCacuCAUUgUaCUCUg -3'
miRNA:   3'- aCGU--CCuCCGCGACGG---GUAAgA-GAGG- -5'
29201 5' -57.6 NC_006150.1 + 507 0.68 0.822061
Target:  5'- gGCAGGAcgccggcagccuGGCGCUGUuuGcucgcgcucgcuUUUUCUCCc -3'
miRNA:   3'- aCGUCCU------------CCGCGACGggU------------AAGAGAGG- -5'
29201 5' -57.6 NC_006150.1 + 472 0.68 0.822061
Target:  5'- gGCGGGGGGCGUcaaaacacGCgCcgUCUCUgCg -3'
miRNA:   3'- aCGUCCUCCGCGa-------CGgGuaAGAGAgG- -5'
29201 5' -57.6 NC_006150.1 + 123976 0.68 0.822061
Target:  5'- aGCAGGGgcacgccguGGCGUcGCCC---UUCUCCg -3'
miRNA:   3'- aCGUCCU---------CCGCGaCGGGuaaGAGAGG- -5'
29201 5' -57.6 NC_006150.1 + 174893 0.68 0.813656
Target:  5'- cGcCAGaaguGGCGCUGCUCAUUCaaUCUgCCg -3'
miRNA:   3'- aC-GUCcu--CCGCGACGGGUAAG--AGA-GG- -5'
29201 5' -57.6 NC_006150.1 + 88421 0.69 0.741461
Target:  5'- gGCGGGGGcGCGCgGCCCAggagCcCCa -3'
miRNA:   3'- aCGUCCUC-CGCGaCGGGUaagaGaGG- -5'
29201 5' -57.6 NC_006150.1 + 73184 0.71 0.633604
Target:  5'- aUGCGGGAGuGUGCggUGCCCAUgcaUUC-CCa -3'
miRNA:   3'- -ACGUCCUC-CGCG--ACGGGUAa--GAGaGG- -5'
29201 5' -57.6 NC_006150.1 + 115696 1.12 0.00163
Target:  5'- aUGCAGGAGGCGCUGCCCAUUCUCUCCa -3'
miRNA:   3'- -ACGUCCUCCGCGACGGGUAAGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.