miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29202 5' -49.7 NC_006150.1 + 206961 0.65 0.999486
Target:  5'- gAAGugUCcgGaGCGGCCgacgguaGCugGGAGCCu -3'
miRNA:   3'- -UUUugAGa-CaUGCUGG-------UGugUCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 101722 0.65 0.999486
Target:  5'- uAAACUCg--AUGAcguagcauaagacCCGCugGGAGCCu -3'
miRNA:   3'- uUUUGAGacaUGCU-------------GGUGugUCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 78310 0.66 0.999377
Target:  5'- gAAGGCUUUGggugUGGCCAU-CGGAGCUg -3'
miRNA:   3'- -UUUUGAGACau--GCUGGUGuGUCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 84529 0.66 0.999233
Target:  5'- aAAAGCgagaCUGcauaACcACCACACAGGGCUc -3'
miRNA:   3'- -UUUUGa---GACa---UGcUGGUGUGUCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 131890 0.66 0.999133
Target:  5'- --uACUCauUAUGGCCGCGCAGcugucuuaucacgccGGCCu -3'
miRNA:   3'- uuuUGAGacAUGCUGGUGUGUC---------------UCGG- -5'
29202 5' -49.7 NC_006150.1 + 175026 0.66 0.999061
Target:  5'- gGAGGCUCgGUGgGAUacagcuugGCACuGAGCCa -3'
miRNA:   3'- -UUUUGAGaCAUgCUGg-------UGUGuCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 191634 0.67 0.998616
Target:  5'- cAAGGCagUGUA-GACCACAgCAGcgGGCCa -3'
miRNA:   3'- -UUUUGagACAUgCUGGUGU-GUC--UCGG- -5'
29202 5' -49.7 NC_006150.1 + 203077 0.67 0.998616
Target:  5'- gAGAGCUCg--GCGACgGCGaggaGGAGCa -3'
miRNA:   3'- -UUUUGAGacaUGCUGgUGUg---UCUCGg -5'
29202 5' -49.7 NC_006150.1 + 119102 0.67 0.998616
Target:  5'- cGAACUUgaugGCGugCGCAgccgaggcCAGGGCCg -3'
miRNA:   3'- uUUUGAGaca-UGCugGUGU--------GUCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 172611 0.67 0.998616
Target:  5'- cGGGACUCgGUGCGgcGCCGgAC-GAGUCg -3'
miRNA:   3'- -UUUUGAGaCAUGC--UGGUgUGuCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 65973 0.67 0.998005
Target:  5'- aAAAACUCUGaAgGACgAaACGGAGCUu -3'
miRNA:   3'- -UUUUGAGACaUgCUGgUgUGUCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 73649 0.67 0.998005
Target:  5'- -uAACggcGUGCGAUC-CACAGAGCg -3'
miRNA:   3'- uuUUGagaCAUGCUGGuGUGUCUCGg -5'
29202 5' -49.7 NC_006150.1 + 3948 0.67 0.998005
Target:  5'- -cAGCUgcCUGUcacgcACaGACCGCACAGcaGGCCu -3'
miRNA:   3'- uuUUGA--GACA-----UG-CUGGUGUGUC--UCGG- -5'
29202 5' -49.7 NC_006150.1 + 152218 0.67 0.997581
Target:  5'- -uAugUCUGgcUGcuuuucggccaccGCCGCGCAGAGCg -3'
miRNA:   3'- uuUugAGACauGC-------------UGGUGUGUCUCGg -5'
29202 5' -49.7 NC_006150.1 + 124769 0.67 0.997181
Target:  5'- cAGGACUCaccUGUGCGACCuCG-GGAGCg -3'
miRNA:   3'- -UUUUGAG---ACAUGCUGGuGUgUCUCGg -5'
29202 5' -49.7 NC_006150.1 + 140367 0.67 0.997181
Target:  5'- ---cCUCUGUGCGACagaGCguGCAGA-CCg -3'
miRNA:   3'- uuuuGAGACAUGCUGg--UG--UGUCUcGG- -5'
29202 5' -49.7 NC_006150.1 + 36171 0.68 0.996674
Target:  5'- aGAGugUgUaGUGCGGCUucggcGCGCAGAGCa -3'
miRNA:   3'- -UUUugAgA-CAUGCUGG-----UGUGUCUCGg -5'
29202 5' -49.7 NC_006150.1 + 124856 0.68 0.996674
Target:  5'- uGAAGCUCUGUACccgguGGCUcgggaGCACuugcucGAGCCc -3'
miRNA:   3'- -UUUUGAGACAUG-----CUGG-----UGUGu-----CUCGG- -5'
29202 5' -49.7 NC_006150.1 + 33608 0.68 0.996093
Target:  5'- aGGAGCUCcGcaaACGACgCGuCACAGAGUCg -3'
miRNA:   3'- -UUUUGAGaCa--UGCUG-GU-GUGUCUCGG- -5'
29202 5' -49.7 NC_006150.1 + 26760 0.69 0.989317
Target:  5'- --cGCUCUGUuCGAUCACuucuuCGGAcGCCc -3'
miRNA:   3'- uuuUGAGACAuGCUGGUGu----GUCU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.