miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29212 5' -54.8 NC_006150.1 + 189960 0.66 0.963518
Target:  5'- aACCUCAGUgCAGCGgaaaaGGCUCaguAUGAa -3'
miRNA:   3'- gUGGAGUCG-GUCGUg----UCGAGgu-UACU- -5'
29212 5' -54.8 NC_006150.1 + 119503 0.66 0.963518
Target:  5'- uCGCUUCuGCCAGaCGCAGC--CGGUGGa -3'
miRNA:   3'- -GUGGAGuCGGUC-GUGUCGagGUUACU- -5'
29212 5' -54.8 NC_006150.1 + 160399 0.66 0.956357
Target:  5'- cCACUggCGGCCAGCACcGUggguaguaucaCCGAUGAu -3'
miRNA:   3'- -GUGGa-GUCGGUCGUGuCGa----------GGUUACU- -5'
29212 5' -54.8 NC_006150.1 + 68701 0.67 0.939301
Target:  5'- uGCCUCugcugacgccGCUAGCGguGCUgCGGUGAc -3'
miRNA:   3'- gUGGAGu---------CGGUCGUguCGAgGUUACU- -5'
29212 5' -54.8 NC_006150.1 + 135713 0.67 0.92936
Target:  5'- aCACCgcguccgagauUCAGCCGGCACAacCUUCAcgGGu -3'
miRNA:   3'- -GUGG-----------AGUCGGUCGUGUc-GAGGUuaCU- -5'
29212 5' -54.8 NC_006150.1 + 64467 0.68 0.918463
Target:  5'- aACCUCA-CgAGcCGCAGCUCCAAc-- -3'
miRNA:   3'- gUGGAGUcGgUC-GUGUCGAGGUUacu -5'
29212 5' -54.8 NC_006150.1 + 103468 0.68 0.918463
Target:  5'- gAUCcCAGCCAcuGCGCAcGCUCuCGGUGAu -3'
miRNA:   3'- gUGGaGUCGGU--CGUGU-CGAG-GUUACU- -5'
29212 5' -54.8 NC_006150.1 + 167389 0.68 0.912657
Target:  5'- gGCUUCA-CCAGUACGGCUCacccuGUGGu -3'
miRNA:   3'- gUGGAGUcGGUCGUGUCGAGgu---UACU- -5'
29212 5' -54.8 NC_006150.1 + 58586 0.68 0.912657
Target:  5'- cCGCCUCgAGCCcGC-CGGCgCCGGUGu -3'
miRNA:   3'- -GUGGAG-UCGGuCGuGUCGaGGUUACu -5'
29212 5' -54.8 NC_006150.1 + 141639 0.68 0.906613
Target:  5'- uCGCCUCAGCCGGUggACauuuGGUUCCGc--- -3'
miRNA:   3'- -GUGGAGUCGGUCG--UG----UCGAGGUuacu -5'
29212 5' -54.8 NC_006150.1 + 28806 0.68 0.906613
Target:  5'- cCACCaaAGCCuGCAUcGCUCCAGUc- -3'
miRNA:   3'- -GUGGagUCGGuCGUGuCGAGGUUAcu -5'
29212 5' -54.8 NC_006150.1 + 133416 0.68 0.900335
Target:  5'- aACCgagggCGGCucgCAGCGCAGCUUucaCGAUGAa -3'
miRNA:   3'- gUGGa----GUCG---GUCGUGUCGAG---GUUACU- -5'
29212 5' -54.8 NC_006150.1 + 91486 0.68 0.899694
Target:  5'- aCACCUCGGgCGGCcguuucuGgAGCUCCAGa-- -3'
miRNA:   3'- -GUGGAGUCgGUCG-------UgUCGAGGUUacu -5'
29212 5' -54.8 NC_006150.1 + 80466 0.68 0.887084
Target:  5'- -uCCUCGGCgAGCGCgAGCUuCCAG-GAa -3'
miRNA:   3'- guGGAGUCGgUCGUG-UCGA-GGUUaCU- -5'
29212 5' -54.8 NC_006150.1 + 88620 0.68 0.887084
Target:  5'- aUACC-CGGCCAacccggggaccGCACAGCUCgcaGGUGGg -3'
miRNA:   3'- -GUGGaGUCGGU-----------CGUGUCGAGg--UUACU- -5'
29212 5' -54.8 NC_006150.1 + 117922 0.69 0.872933
Target:  5'- aGCCgggUCGGUCGGCACGccucGCUCC-GUGAa -3'
miRNA:   3'- gUGG---AGUCGGUCGUGU----CGAGGuUACU- -5'
29212 5' -54.8 NC_006150.1 + 135761 0.7 0.825497
Target:  5'- uCAUCUCAGCUGGUACGGgaUCAuUGAa -3'
miRNA:   3'- -GUGGAGUCGGUCGUGUCgaGGUuACU- -5'
29212 5' -54.8 NC_006150.1 + 195380 0.7 0.808201
Target:  5'- gCGCCUCAGCCAGUGCAuGUUgaGGUGc -3'
miRNA:   3'- -GUGGAGUCGGUCGUGU-CGAggUUACu -5'
29212 5' -54.8 NC_006150.1 + 187522 0.7 0.799309
Target:  5'- uGCCUCAGCCAGacaACGGuCUUCAucaGAa -3'
miRNA:   3'- gUGGAGUCGGUCg--UGUC-GAGGUua-CU- -5'
29212 5' -54.8 NC_006150.1 + 78027 0.71 0.789355
Target:  5'- aCACCUUccacaaaagaAGCCacAGCaccaccgACAGCUCCGAUGGc -3'
miRNA:   3'- -GUGGAG----------UCGG--UCG-------UGUCGAGGUUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.