miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29214 3' -51.8 NC_006150.1 + 118245 0.66 0.996497
Target:  5'- cGGCGUgcucucccagcUGCAgaaUGUcCAUGGGCAGCGAc -3'
miRNA:   3'- -UCGUA-----------GCGUag-GCA-GUACUCGUUGCU- -5'
29214 3' -51.8 NC_006150.1 + 196317 0.66 0.996497
Target:  5'- aAGUGUUGCAUCCagcUCGUGAGCcuCu- -3'
miRNA:   3'- -UCGUAGCGUAGGc--AGUACUCGuuGcu -5'
29214 3' -51.8 NC_006150.1 + 94088 0.66 0.995904
Target:  5'- uGCcgCgGCcUCCGUCGugugUGGGUAACGGu -3'
miRNA:   3'- uCGuaG-CGuAGGCAGU----ACUCGUUGCU- -5'
29214 3' -51.8 NC_006150.1 + 45008 0.66 0.99447
Target:  5'- cGGCcaAUCGCAUCgGguagGAGUGGCGAc -3'
miRNA:   3'- -UCG--UAGCGUAGgCaguaCUCGUUGCU- -5'
29214 3' -51.8 NC_006150.1 + 109007 0.66 0.993614
Target:  5'- uGCA-CGCGUCCGU---GcGCAGCGAg -3'
miRNA:   3'- uCGUaGCGUAGGCAguaCuCGUUGCU- -5'
29214 3' -51.8 NC_006150.1 + 37030 0.66 0.992656
Target:  5'- aGGCGcCGCAgcuacagaUUCGUCGUGcAGCAgacuGCGAg -3'
miRNA:   3'- -UCGUaGCGU--------AGGCAGUAC-UCGU----UGCU- -5'
29214 3' -51.8 NC_006150.1 + 123723 0.67 0.99027
Target:  5'- cGUAUCGCuugucugAUCCGUCAaaaUGuGCAAUGc -3'
miRNA:   3'- uCGUAGCG-------UAGGCAGU---ACuCGUUGCu -5'
29214 3' -51.8 NC_006150.1 + 73939 0.67 0.986023
Target:  5'- cGCGUCGCGgccgCCGcUUgcGAGuCAACGAc -3'
miRNA:   3'- uCGUAGCGUa---GGC-AGuaCUC-GUUGCU- -5'
29214 3' -51.8 NC_006150.1 + 86318 0.68 0.984269
Target:  5'- uGGUAggagUGCAgaCCGUuacaugaccacCAUGAGCAACGAg -3'
miRNA:   3'- -UCGUa---GCGUa-GGCA-----------GUACUCGUUGCU- -5'
29214 3' -51.8 NC_006150.1 + 148886 0.68 0.980266
Target:  5'- cGCAccgUCGCuaccgggaugGUCCGUCAaugGAGCGuGCGAa -3'
miRNA:   3'- uCGU---AGCG----------UAGGCAGUa--CUCGU-UGCU- -5'
29214 3' -51.8 NC_006150.1 + 131933 0.68 0.97555
Target:  5'- gGGCGaCGaCGgccuugCCGUCGUGAGCcaGACGGu -3'
miRNA:   3'- -UCGUaGC-GUa-----GGCAGUACUCG--UUGCU- -5'
29214 3' -51.8 NC_006150.1 + 23877 0.69 0.972629
Target:  5'- uGCAagcucaucaaaacUUGCAUCUGUCAUGuuGcCAGCGAa -3'
miRNA:   3'- uCGU-------------AGCGUAGGCAGUACu-C-GUUGCU- -5'
29214 3' -51.8 NC_006150.1 + 171925 0.75 0.769979
Target:  5'- cAGCGuucUCGCcgCCGUCAUGAGUucUGAg -3'
miRNA:   3'- -UCGU---AGCGuaGGCAGUACUCGuuGCU- -5'
29214 3' -51.8 NC_006150.1 + 125941 1.1 0.009091
Target:  5'- aAGCAUCGCAUCCGUCAUGAGCAACGAg -3'
miRNA:   3'- -UCGUAGCGUAGGCAGUACUCGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.