miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 5' -47 NC_006150.1 + 75710 0.67 0.99991
Target:  5'- cAGCUCCaccguGAGCacaucgcucuccgGCGGAGAcUCGCCCc -3'
miRNA:   3'- cUCGAGGau---UUCG-------------CGUUUUU-AGUGGG- -5'
29219 5' -47 NC_006150.1 + 75780 0.7 0.997134
Target:  5'- gGAGCagCU--GGCGCucAAGGUCACCUg -3'
miRNA:   3'- -CUCGagGAuuUCGCGu-UUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 83313 0.67 0.99995
Target:  5'- aAGaUCCUucAGGCGCAgggcGAAAUCAgCCg -3'
miRNA:   3'- cUCgAGGAu-UUCGCGU----UUUUAGUgGG- -5'
29219 5' -47 NC_006150.1 + 85050 0.68 0.999688
Target:  5'- uGAGCUCCguGAGCGCcuuGAUgaGCUCg -3'
miRNA:   3'- -CUCGAGGauUUCGCGuuuUUAg-UGGG- -5'
29219 5' -47 NC_006150.1 + 88174 0.74 0.971662
Target:  5'- gGGGCUCCUGGGccGCGCGcccc-CGCCCu -3'
miRNA:   3'- -CUCGAGGAUUU--CGCGUuuuuaGUGGG- -5'
29219 5' -47 NC_006150.1 + 90904 0.68 0.999607
Target:  5'- aAGCagCCUGGGGUGCGGcAGUCACa- -3'
miRNA:   3'- cUCGa-GGAUUUCGCGUUuUUAGUGgg -5'
29219 5' -47 NC_006150.1 + 91507 0.68 0.999588
Target:  5'- gGAGCUCC-AGAGCGguGucgcgcgugCACUCg -3'
miRNA:   3'- -CUCGAGGaUUUCGCguUuuua-----GUGGG- -5'
29219 5' -47 NC_006150.1 + 92544 0.68 0.999808
Target:  5'- uGAGCUgCgAGAGCGCGGGcc-CACCg -3'
miRNA:   3'- -CUCGAgGaUUUCGCGUUUuuaGUGGg -5'
29219 5' -47 NC_006150.1 + 103261 0.69 0.998765
Target:  5'- cGAGCguaaacuugccggCCcGAGGCGCAAAGA-CGCUCu -3'
miRNA:   3'- -CUCGa------------GGaUUUCGCGUUUUUaGUGGG- -5'
29219 5' -47 NC_006150.1 + 103302 0.68 0.999755
Target:  5'- cGAGCucgUCCgcgGGAGgGCGuc-GUUACCCa -3'
miRNA:   3'- -CUCG---AGGa--UUUCgCGUuuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 105580 0.67 0.999885
Target:  5'- uGAGUUCCUcuAGuCGCAGAGuguUCAgcggcuggcCCCg -3'
miRNA:   3'- -CUCGAGGAuuUC-GCGUUUUu--AGU---------GGG- -5'
29219 5' -47 NC_006150.1 + 106643 0.74 0.965312
Target:  5'- -cGCUCCUGAauguagAGCGCAucgacgcuGUUGCCCa -3'
miRNA:   3'- cuCGAGGAUU------UCGCGUuuu-----UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 115173 0.68 0.999808
Target:  5'- uGGCUCCgguGAGCuuuGCGAGu-UUGCCCa -3'
miRNA:   3'- cUCGAGGau-UUCG---CGUUUuuAGUGGG- -5'
29219 5' -47 NC_006150.1 + 115994 0.66 0.999963
Target:  5'- aGAGC-CCgac-GCGCAGAcAUUugCCu -3'
miRNA:   3'- -CUCGaGGauuuCGCGUUUuUAGugGG- -5'
29219 5' -47 NC_006150.1 + 121582 0.71 0.99365
Target:  5'- cAGCUCCUGGAGC---AAGAUCGCUUc -3'
miRNA:   3'- cUCGAGGAUUUCGcguUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 124385 0.7 0.998613
Target:  5'- uGGGCuUCCU--GGCGCAAAAcacCACCa -3'
miRNA:   3'- -CUCG-AGGAuuUCGCGUUUUua-GUGGg -5'
29219 5' -47 NC_006150.1 + 126669 0.66 0.99998
Target:  5'- cGAGUgugCCUAGauGGCGUcgggAGGGAUCACUUc -3'
miRNA:   3'- -CUCGa--GGAUU--UCGCG----UUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 128603 0.67 0.999912
Target:  5'- -cGCUCCUGGAucCGCGAAgcgGAUUcCCCg -3'
miRNA:   3'- cuCGAGGAUUUc-GCGUUU---UUAGuGGG- -5'
29219 5' -47 NC_006150.1 + 128816 1.13 0.016865
Target:  5'- aGAGCUCCUAAAGCGCAAAAAUCACCCc -3'
miRNA:   3'- -CUCGAGGAUUUCGCGUUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 129628 0.7 0.997548
Target:  5'- -cGCUUCgUGGGGCGCGAGGucccuacGUgGCCCg -3'
miRNA:   3'- cuCGAGG-AUUUCGCGUUUU-------UAgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.