miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 5' -47 NC_006150.1 + 3597 0.77 0.89282
Target:  5'- cAGCUCCU---GUGCAAu-GUCACCCg -3'
miRNA:   3'- cUCGAGGAuuuCGCGUUuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 4432 0.66 0.999985
Target:  5'- cGAuuUUCUGAGGCGCAGGGuccUCAUUCa -3'
miRNA:   3'- -CUcgAGGAUUUCGCGUUUUu--AGUGGG- -5'
29219 5' -47 NC_006150.1 + 8878 0.7 0.998323
Target:  5'- gGAGCUCCUcAAGGCGCGcAAcg-GCUCg -3'
miRNA:   3'- -CUCGAGGA-UUUCGCGUuUUuagUGGG- -5'
29219 5' -47 NC_006150.1 + 15255 0.71 0.996608
Target:  5'- uGGCUCCUGgaaGAGCGCuuAAAg-AUCCa -3'
miRNA:   3'- cUCGAGGAU---UUCGCGuuUUUagUGGG- -5'
29219 5' -47 NC_006150.1 + 26511 0.67 0.99995
Target:  5'- -cGUUCCUGGAGacuguCGUuuucGGUCGCCCa -3'
miRNA:   3'- cuCGAGGAUUUC-----GCGuuu-UUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 26905 0.66 0.999985
Target:  5'- cGAGCagCCUGGAacauCGUAGAcGUCugCCg -3'
miRNA:   3'- -CUCGa-GGAUUUc---GCGUUUuUAGugGG- -5'
29219 5' -47 NC_006150.1 + 31989 0.72 0.992655
Target:  5'- uGGCUCCgaagcGAGCGCAGcauaaACCCg -3'
miRNA:   3'- cUCGAGGau---UUCGCGUUuuuagUGGG- -5'
29219 5' -47 NC_006150.1 + 33354 0.73 0.979552
Target:  5'- uGAGCgcgaUUUAAcGCGCGGAAucGUCACCCa -3'
miRNA:   3'- -CUCGa---GGAUUuCGCGUUUU--UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 33609 0.75 0.945232
Target:  5'- gGAGCUCCgcaaacGAcGCGUcacAGAGUCGCCCa -3'
miRNA:   3'- -CUCGAGGa-----UUuCGCGu--UUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 37785 0.69 0.999241
Target:  5'- aGGUcuUCCUAucGCGC----GUCACCCc -3'
miRNA:   3'- cUCG--AGGAUuuCGCGuuuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 38208 0.67 0.99995
Target:  5'- aGAGCUCgUAAAGCGUgu-GAcgAUCCa -3'
miRNA:   3'- -CUCGAGgAUUUCGCGuuuUUagUGGG- -5'
29219 5' -47 NC_006150.1 + 39777 0.66 0.999972
Target:  5'- cGGGCgcggcagaaUCUGAAGCGCGAAug-CAUCUg -3'
miRNA:   3'- -CUCGa--------GGAUUUCGCGUUUuuaGUGGG- -5'
29219 5' -47 NC_006150.1 + 43421 0.72 0.992655
Target:  5'- cAGCUCCgucuGUGCAAAAAcuuuUCGCCg -3'
miRNA:   3'- cUCGAGGauuuCGCGUUUUU----AGUGGg -5'
29219 5' -47 NC_006150.1 + 45989 0.69 0.999241
Target:  5'- cGGC-CCaUAAGGCGUAucGAUCggGCCCa -3'
miRNA:   3'- cUCGaGG-AUUUCGCGUuuUUAG--UGGG- -5'
29219 5' -47 NC_006150.1 + 47765 0.68 0.999808
Target:  5'- cAGCUUCUGGAG-GCGAGGA-C-CCCa -3'
miRNA:   3'- cUCGAGGAUUUCgCGUUUUUaGuGGG- -5'
29219 5' -47 NC_006150.1 + 51535 0.69 0.999386
Target:  5'- cAGUUggCUGGAGCGCAAuuGUcCGCCCc -3'
miRNA:   3'- cUCGAg-GAUUUCGCGUUuuUA-GUGGG- -5'
29219 5' -47 NC_006150.1 + 69534 0.68 0.999507
Target:  5'- cAGCUgCCUGGAGCuCGAGAAcugCGCCa -3'
miRNA:   3'- cUCGA-GGAUUUCGcGUUUUUa--GUGGg -5'
29219 5' -47 NC_006150.1 + 70559 0.68 0.999755
Target:  5'- aGAGUUgC-AGGGCGCAAAuuugcuccucAGUCugCCa -3'
miRNA:   3'- -CUCGAgGaUUUCGCGUUU----------UUAGugGG- -5'
29219 5' -47 NC_006150.1 + 74983 0.7 0.998323
Target:  5'- uGAGCUCguCUAaagucAAGCGCGAGAGcugaaccgcCGCCCg -3'
miRNA:   3'- -CUCGAG--GAU-----UUCGCGUUUUUa--------GUGGG- -5'
29219 5' -47 NC_006150.1 + 75503 0.67 0.999876
Target:  5'- cAGCUCUcauuGAGCGCGGccccaguuuggcucAuuauAUCACCCa -3'
miRNA:   3'- cUCGAGGau--UUCGCGUU--------------Uu---UAGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.