Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29219 | 5' | -47 | NC_006150.1 | + | 92544 | 0.68 | 0.999808 |
Target: 5'- uGAGCUgCgAGAGCGCGGGcc-CACCg -3' miRNA: 3'- -CUCGAgGaUUUCGCGUUUuuaGUGGg -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 37785 | 0.69 | 0.999241 |
Target: 5'- aGGUcuUCCUAucGCGC----GUCACCCc -3' miRNA: 3'- cUCG--AGGAUuuCGCGuuuuUAGUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 130138 | 0.69 | 0.999373 |
Target: 5'- gGAGCUCCagcgugcUAGGGUuuuGCAGAAggCugCCg -3' miRNA: 3'- -CUCGAGG-------AUUUCG---CGUUUUuaGugGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 196869 | 0.68 | 0.999579 |
Target: 5'- -uGCUCUggggaaucuucacaUAAGGCGCAgccAAAAUCaugaGCCCa -3' miRNA: 3'- cuCGAGG--------------AUUUCGCGU---UUUUAG----UGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 91507 | 0.68 | 0.999588 |
Target: 5'- gGAGCUCC-AGAGCGguGucgcgcgugCACUCg -3' miRNA: 3'- -CUCGAGGaUUUCGCguUuuua-----GUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 90904 | 0.68 | 0.999607 |
Target: 5'- aAGCagCCUGGGGUGCGGcAGUCACa- -3' miRNA: 3'- cUCGa-GGAUUUCGCGUUuUUAGUGgg -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 85050 | 0.68 | 0.999688 |
Target: 5'- uGAGCUCCguGAGCGCcuuGAUgaGCUCg -3' miRNA: 3'- -CUCGAGGauUUCGCGuuuUUAg-UGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 70559 | 0.68 | 0.999755 |
Target: 5'- aGAGUUgC-AGGGCGCAAAuuugcuccucAGUCugCCa -3' miRNA: 3'- -CUCGAgGaUUUCGCGUUU----------UUAGugGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 47765 | 0.68 | 0.999808 |
Target: 5'- cAGCUUCUGGAG-GCGAGGA-C-CCCa -3' miRNA: 3'- cUCGAGGAUUUCgCGUUUUUaGuGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 74983 | 0.7 | 0.998323 |
Target: 5'- uGAGCUCguCUAaagucAAGCGCGAGAGcugaaccgcCGCCCg -3' miRNA: 3'- -CUCGAG--GAU-----UUCGCGUUUUUa--------GUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 187334 | 0.7 | 0.997985 |
Target: 5'- -uGUUUCUGGAGCGUAuuuGAGUCAUUCc -3' miRNA: 3'- cuCGAGGAUUUCGCGUu--UUUAGUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 129628 | 0.7 | 0.997548 |
Target: 5'- -cGCUUCgUGGGGCGCGAGGucccuacGUgGCCCg -3' miRNA: 3'- cuCGAGG-AUUUCGCGUUUU-------UAgUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 33609 | 0.75 | 0.945232 |
Target: 5'- gGAGCUCCgcaaacGAcGCGUcacAGAGUCGCCCa -3' miRNA: 3'- -CUCGAGGa-----UUuCGCGu--UUUUAGUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 88174 | 0.74 | 0.971662 |
Target: 5'- gGGGCUCCUGGGccGCGCGcccc-CGCCCu -3' miRNA: 3'- -CUCGAGGAUUU--CGCGUuuuuaGUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 33354 | 0.73 | 0.979552 |
Target: 5'- uGAGCgcgaUUUAAcGCGCGGAAucGUCACCCa -3' miRNA: 3'- -CUCGa---GGAUUuCGCGUUUU--UAGUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 207047 | 0.72 | 0.988908 |
Target: 5'- cAGCUCgCcGAAcGCGUccauGAGAAUCACCCa -3' miRNA: 3'- cUCGAG-GaUUU-CGCG----UUUUUAGUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 31989 | 0.72 | 0.992655 |
Target: 5'- uGGCUCCgaagcGAGCGCAGcauaaACCCg -3' miRNA: 3'- cUCGAGGau---UUCGCGUUuuuagUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 43421 | 0.72 | 0.992655 |
Target: 5'- cAGCUCCgucuGUGCAAAAAcuuuUCGCCg -3' miRNA: 3'- cUCGAGGauuuCGCGUUUUU----AGUGGg -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 207541 | 0.71 | 0.995316 |
Target: 5'- -uGCUCUUGcuGGGCGguaGAAGGUCAUCCa -3' miRNA: 3'- cuCGAGGAU--UUCGCg--UUUUUAGUGGG- -5' |
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29219 | 5' | -47 | NC_006150.1 | + | 132799 | 0.7 | 0.997134 |
Target: 5'- -cGCUCUc-GAGCGgGGGcGUCGCCCg -3' miRNA: 3'- cuCGAGGauUUCGCgUUUuUAGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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