miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 5' -47 NC_006150.1 + 128816 1.13 0.016865
Target:  5'- aGAGCUCCUAAAGCGCAAAAAUCACCCc -3'
miRNA:   3'- -CUCGAGGAUUUCGCGUUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 3597 0.77 0.89282
Target:  5'- cAGCUCCU---GUGCAAu-GUCACCCg -3'
miRNA:   3'- cUCGAGGAuuuCGCGUUuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 33609 0.75 0.945232
Target:  5'- gGAGCUCCgcaaacGAcGCGUcacAGAGUCGCCCa -3'
miRNA:   3'- -CUCGAGGa-----UUuCGCGu--UUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 106643 0.74 0.965312
Target:  5'- -cGCUCCUGAauguagAGCGCAucgacgcuGUUGCCCa -3'
miRNA:   3'- cuCGAGGAUU------UCGCGUuuu-----UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 88174 0.74 0.971662
Target:  5'- gGGGCUCCUGGGccGCGCGcccc-CGCCCu -3'
miRNA:   3'- -CUCGAGGAUUU--CGCGUuuuuaGUGGG- -5'
29219 5' -47 NC_006150.1 + 33354 0.73 0.979552
Target:  5'- uGAGCgcgaUUUAAcGCGCGGAAucGUCACCCa -3'
miRNA:   3'- -CUCGa---GGAUUuCGCGUUUU--UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 215940 0.73 0.979552
Target:  5'- aGAGCggCCUGAAGCaGCA----UCGCCUg -3'
miRNA:   3'- -CUCGa-GGAUUUCG-CGUuuuuAGUGGG- -5'
29219 5' -47 NC_006150.1 + 148943 0.73 0.983818
Target:  5'- aAGCUCCUcAGGGCGCuccucggcGUCGCCa -3'
miRNA:   3'- cUCGAGGA-UUUCGCGuuuu----UAGUGGg -5'
29219 5' -47 NC_006150.1 + 181652 0.72 0.987373
Target:  5'- -cGCUCgCUuucacccaGAAGCGCAugccAUCACCCu -3'
miRNA:   3'- cuCGAG-GA--------UUUCGCGUuuu-UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 207047 0.72 0.988908
Target:  5'- cAGCUCgCcGAAcGCGUccauGAGAAUCACCCa -3'
miRNA:   3'- cUCGAG-GaUUU-CGCG----UUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 43421 0.72 0.992655
Target:  5'- cAGCUCCgucuGUGCAAAAAcuuuUCGCCg -3'
miRNA:   3'- cUCGAGGauuuCGCGUUUUU----AGUGGg -5'
29219 5' -47 NC_006150.1 + 31989 0.72 0.992655
Target:  5'- uGGCUCCgaagcGAGCGCAGcauaaACCCg -3'
miRNA:   3'- cUCGAGGau---UUCGCGUUuuuagUGGG- -5'
29219 5' -47 NC_006150.1 + 121582 0.71 0.99365
Target:  5'- cAGCUCCUGGAGC---AAGAUCGCUUc -3'
miRNA:   3'- cUCGAGGAUUUCGcguUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 207541 0.71 0.995316
Target:  5'- -uGCUCUUGcuGGGCGguaGAAGGUCAUCCa -3'
miRNA:   3'- cuCGAGGAU--UUCGCg--UUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 181379 0.71 0.995316
Target:  5'- -cGcCUCCUAAGGCGUuauAAGGUCugCg -3'
miRNA:   3'- cuC-GAGGAUUUCGCGu--UUUUAGugGg -5'
29219 5' -47 NC_006150.1 + 15255 0.71 0.996608
Target:  5'- uGGCUCCUGgaaGAGCGCuuAAAg-AUCCa -3'
miRNA:   3'- cUCGAGGAU---UUCGCGuuUUUagUGGG- -5'
29219 5' -47 NC_006150.1 + 75780 0.7 0.997134
Target:  5'- gGAGCagCU--GGCGCucAAGGUCACCUg -3'
miRNA:   3'- -CUCGagGAuuUCGCGu-UUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 132799 0.7 0.997134
Target:  5'- -cGCUCUc-GAGCGgGGGcGUCGCCCg -3'
miRNA:   3'- cuCGAGGauUUCGCgUUUuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 129628 0.7 0.997548
Target:  5'- -cGCUUCgUGGGGCGCGAGGucccuacGUgGCCCg -3'
miRNA:   3'- cuCGAGG-AUUUCGCGUUUU-------UAgUGGG- -5'
29219 5' -47 NC_006150.1 + 187334 0.7 0.997985
Target:  5'- -uGUUUCUGGAGCGUAuuuGAGUCAUUCc -3'
miRNA:   3'- cuCGAGGAUUUCGCGUu--UUUAGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.