miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29225 3' -59.6 NC_006150.1 + 766 0.67 0.794314
Target:  5'- gCU-GCGCCGCCUa-GCGUCagGCCACc -3'
miRNA:   3'- gGAcCGUGGCGGAgcUGCAGg-UGGUG- -5'
29225 3' -59.6 NC_006150.1 + 799 0.78 0.274808
Target:  5'- gCCUGcGCGCCGCCUacuaucaacuauccgCGACGUUCGCC-Ca -3'
miRNA:   3'- -GGAC-CGUGGCGGA---------------GCUGCAGGUGGuG- -5'
29225 3' -59.6 NC_006150.1 + 26911 0.69 0.722345
Target:  5'- gCCUGGaaCAUCGUa--GACGUCUGCCGCc -3'
miRNA:   3'- -GGACC--GUGGCGgagCUGCAGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 49054 0.67 0.819355
Target:  5'- gCUGGUagaaGCCuaGCUUCGAaagcUCCACCACu -3'
miRNA:   3'- gGACCG----UGG--CGGAGCUgc--AGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 58576 0.66 0.843028
Target:  5'- uCCUGcaugACCGCCUCGA-GcCCGCCGg -3'
miRNA:   3'- -GGACcg--UGGCGGAGCUgCaGGUGGUg -5'
29225 3' -59.6 NC_006150.1 + 68252 0.67 0.811151
Target:  5'- --cGGuUGCCGCCUagGAUGUCUGCUACg -3'
miRNA:   3'- ggaCC-GUGGCGGAg-CUGCAGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 71241 0.68 0.731664
Target:  5'- gUCUGGCGgCGUUgCGACa-CCACCACa -3'
miRNA:   3'- -GGACCGUgGCGGaGCUGcaGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 74281 0.68 0.731664
Target:  5'- gCUGGCGgCGCg-CGACGaUUACCACa -3'
miRNA:   3'- gGACCGUgGCGgaGCUGCaGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 86180 0.75 0.399769
Target:  5'- gCCUGGCgcGCCGCCcccuUCGACGguuauUCgACCGCu -3'
miRNA:   3'- -GGACCG--UGGCGG----AGCUGC-----AGgUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 88109 0.67 0.819355
Target:  5'- uCCUGcauGCGCCGCCcccucccccUCGACaaccccaccCCGCCGCg -3'
miRNA:   3'- -GGAC---CGUGGCGG---------AGCUGca-------GGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 89059 0.66 0.855035
Target:  5'- uCCaGGUcgccuccagGCCGCCggcuaugCGACGgcgacaucggccgCCACCACg -3'
miRNA:   3'- -GGaCCG---------UGGCGGa------GCUGCa------------GGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 91652 0.68 0.768097
Target:  5'- uCCUGGCGCUGCgaCGGCGaagcagacagauUCagaacaCACCGCa -3'
miRNA:   3'- -GGACCGUGGCGgaGCUGC------------AG------GUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 92608 0.66 0.872174
Target:  5'- aCUGGCAaCGUggugucugCUCGGgGuuUCCGCCACg -3'
miRNA:   3'- gGACCGUgGCG--------GAGCUgC--AGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 102349 0.67 0.819355
Target:  5'- --aGGCGgCGCUUCGG-GcCCACCGCc -3'
miRNA:   3'- ggaCCGUgGCGGAGCUgCaGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 110773 0.66 0.857966
Target:  5'- gCUGGa--UGCCacaCGGCGUgCACCACa -3'
miRNA:   3'- gGACCgugGCGGa--GCUGCAgGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 113608 0.66 0.843028
Target:  5'- gCCcGGCGgagGUCUCGACGUCUGCCu- -3'
miRNA:   3'- -GGaCCGUgg-CGGAGCUGCAGGUGGug -5'
29225 3' -59.6 NC_006150.1 + 123869 0.66 0.850585
Target:  5'- gUUGGUGCCGCCUaUGAuuuCGUCCAUgaACg -3'
miRNA:   3'- gGACCGUGGCGGA-GCU---GCAGGUGg-UG- -5'
29225 3' -59.6 NC_006150.1 + 126458 0.67 0.819355
Target:  5'- aCCUGaGCACCGCUUUGAU-UUCGCgAUa -3'
miRNA:   3'- -GGAC-CGUGGCGGAGCUGcAGGUGgUG- -5'
29225 3' -59.6 NC_006150.1 + 133660 0.71 0.587992
Target:  5'- gCUGcGCugcgaGCCGcCCUCGGuuuccacgcguCGUCCGCCACa -3'
miRNA:   3'- gGAC-CG-----UGGC-GGAGCU-----------GCAGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 135797 1.1 0.002092
Target:  5'- gCCUGGCACCGCCUCGACGUCCACCACc -3'
miRNA:   3'- -GGACCGUGGCGGAGCUGCAGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.