Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29225 | 3' | -59.6 | NC_006150.1 | + | 799 | 0.78 | 0.274808 |
Target: 5'- gCCUGcGCGCCGCCUacuaucaacuauccgCGACGUUCGCC-Ca -3' miRNA: 3'- -GGAC-CGUGGCGGA---------------GCUGCAGGUGGuG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 92608 | 0.66 | 0.872174 |
Target: 5'- aCUGGCAaCGUggugucugCUCGGgGuuUCCGCCACg -3' miRNA: 3'- gGACCGUgGCG--------GAGCUgC--AGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 140656 | 0.66 | 0.86658 |
Target: 5'- aCC-GGCACgGCCggugccggcaaGACGUCCaguauucaggugcugGCCGCg -3' miRNA: 3'- -GGaCCGUGgCGGag---------CUGCAGG---------------UGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 123869 | 0.66 | 0.850585 |
Target: 5'- gUUGGUGCCGCCUaUGAuuuCGUCCAUgaACg -3' miRNA: 3'- gGACCGUGGCGGA-GCU---GCAGGUGg-UG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 164326 | 0.66 | 0.850585 |
Target: 5'- aCCUGaagaCGCCGCUUCuACGUCUgcGCCAg -3' miRNA: 3'- -GGACc---GUGGCGGAGcUGCAGG--UGGUg -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 58576 | 0.66 | 0.843028 |
Target: 5'- uCCUGcaugACCGCCUCGA-GcCCGCCGg -3' miRNA: 3'- -GGACcg--UGGCGGAGCUgCaGGUGGUg -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 88109 | 0.67 | 0.819355 |
Target: 5'- uCCUGcauGCGCCGCCcccucccccUCGACaaccccaccCCGCCGCg -3' miRNA: 3'- -GGAC---CGUGGCGG---------AGCUGca-------GGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 49054 | 0.67 | 0.819355 |
Target: 5'- gCUGGUagaaGCCuaGCUUCGAaagcUCCACCACu -3' miRNA: 3'- gGACCG----UGG--CGGAGCUgc--AGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 156412 | 0.67 | 0.811151 |
Target: 5'- aCUGGCACaaGCCUCuGCaGUCUugcggACCACu -3' miRNA: 3'- gGACCGUGg-CGGAGcUG-CAGG-----UGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 86180 | 0.75 | 0.399769 |
Target: 5'- gCCUGGCgcGCCGCCcccuUCGACGguuauUCgACCGCu -3' miRNA: 3'- -GGACCG--UGGCGG----AGCUGC-----AGgUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 204542 | 0.69 | 0.674859 |
Target: 5'- -aUGGCucGCCGCUUCG-CGcUCUGCCGCu -3' miRNA: 3'- ggACCG--UGGCGGAGCuGC-AGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 152221 | 0.69 | 0.722345 |
Target: 5'- gUCUGGCugCuuUUCGGCcaCCGCCGCg -3' miRNA: 3'- -GGACCGugGcgGAGCUGcaGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 26911 | 0.69 | 0.722345 |
Target: 5'- gCCUGGaaCAUCGUa--GACGUCUGCCGCc -3' miRNA: 3'- -GGACC--GUGGCGgagCUGCAGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 74281 | 0.68 | 0.731664 |
Target: 5'- gCUGGCGgCGCg-CGACGaUUACCACa -3' miRNA: 3'- gGACCGUgGCGgaGCUGCaGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 766 | 0.67 | 0.794314 |
Target: 5'- gCU-GCGCCGCCUa-GCGUCagGCCACc -3' miRNA: 3'- gGAcCGUGGCGGAgcUGCAGg-UGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 168927 | 0.66 | 0.872174 |
Target: 5'- aUCUGG-GCCGCUguccUGGCaagucgGUCCGCCGCa -3' miRNA: 3'- -GGACCgUGGCGGa---GCUG------CAGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 143797 | 0.73 | 0.467386 |
Target: 5'- --aGGCGCCGCUgcuGGCGcgCCGCCGCa -3' miRNA: 3'- ggaCCGUGGCGGag-CUGCa-GGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 133660 | 0.71 | 0.587992 |
Target: 5'- gCUGcGCugcgaGCCGcCCUCGGuuuccacgcguCGUCCGCCACa -3' miRNA: 3'- gGAC-CG-----UGGC-GGAGCU-----------GCAGGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 150113 | 0.7 | 0.616917 |
Target: 5'- aCUGGUGCCGCCgaGGCGUgCUGCUGCu -3' miRNA: 3'- gGACCGUGGCGGagCUGCA-GGUGGUG- -5' |
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29225 | 3' | -59.6 | NC_006150.1 | + | 181526 | 0.7 | 0.665238 |
Target: 5'- cCCagGGCAgCCGCCUCucccgcccuccGCGUCCGCCuCg -3' miRNA: 3'- -GGa-CCGU-GGCGGAGc----------UGCAGGUGGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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