miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29227 5' -50.4 NC_006150.1 + 160946 0.66 0.999003
Target:  5'- uUCuauGGUGcUCCUCcgaCGUCCCCAGg -3'
miRNA:   3'- -AGcauUCAU-AGGAGuagGUAGGGGUC- -5'
29227 5' -50.4 NC_006150.1 + 81700 0.66 0.998543
Target:  5'- cUGUGcAGgGUCCUCAUgaaCGUCCUCAGc -3'
miRNA:   3'- aGCAU-UCaUAGGAGUAg--GUAGGGGUC- -5'
29227 5' -50.4 NC_006150.1 + 153336 0.67 0.997916
Target:  5'- aCGUGAaccaUGUUaggaUCAUCCAUCCCCc- -3'
miRNA:   3'- aGCAUUc---AUAGg---AGUAGGUAGGGGuc -5'
29227 5' -50.4 NC_006150.1 + 81595 0.67 0.997526
Target:  5'- uUCGUGGGgucgGUCUUUG-CCGcCCCCAGc -3'
miRNA:   3'- -AGCAUUCa---UAGGAGUaGGUaGGGGUC- -5'
29227 5' -50.4 NC_006150.1 + 49385 0.67 0.997526
Target:  5'- ---aAAGUAUCCcuaagaUCGUCCAUgCCCGa -3'
miRNA:   3'- agcaUUCAUAGG------AGUAGGUAgGGGUc -5'
29227 5' -50.4 NC_006150.1 + 101626 0.67 0.997526
Target:  5'- cUCGaGGGgauUCCUgGUCCGucaUCCCCAc -3'
miRNA:   3'- -AGCaUUCau-AGGAgUAGGU---AGGGGUc -5'
29227 5' -50.4 NC_006150.1 + 189579 0.67 0.995974
Target:  5'- gUCGUAGGUAUagaaCAUCCAUCUgguggCCAGc -3'
miRNA:   3'- -AGCAUUCAUAgga-GUAGGUAGG-----GGUC- -5'
29227 5' -50.4 NC_006150.1 + 201035 0.68 0.994473
Target:  5'- -aGUGAGUcaucucuGUCCUCAgauacccaugaUCCAccacCCCCAGa -3'
miRNA:   3'- agCAUUCA-------UAGGAGU-----------AGGUa---GGGGUC- -5'
29227 5' -50.4 NC_006150.1 + 55907 0.68 0.993704
Target:  5'- -------cGUCCUCGUCCGUgCCCAa -3'
miRNA:   3'- agcauucaUAGGAGUAGGUAgGGGUc -5'
29227 5' -50.4 NC_006150.1 + 132505 0.69 0.984394
Target:  5'- aUCGUAccagGUCCUCGUucUCAUCCCCc- -3'
miRNA:   3'- -AGCAUuca-UAGGAGUA--GGUAGGGGuc -5'
29227 5' -50.4 NC_006150.1 + 87514 0.7 0.975678
Target:  5'- uUCGUGGGUcugggGUCC-CuuuuUCCAUCCCCc- -3'
miRNA:   3'- -AGCAUUCA-----UAGGaGu---AGGUAGGGGuc -5'
29227 5' -50.4 NC_006150.1 + 155504 0.71 0.967122
Target:  5'- -------gGUCCUCAUCCAUCUUCAGc -3'
miRNA:   3'- agcauucaUAGGAGUAGGUAGGGGUC- -5'
29227 5' -50.4 NC_006150.1 + 84865 0.73 0.918269
Target:  5'- gUUGUAGGUGUCCUCAcaCAaCCCCGu -3'
miRNA:   3'- -AGCAUUCAUAGGAGUagGUaGGGGUc -5'
29227 5' -50.4 NC_006150.1 + 142419 1.09 0.013885
Target:  5'- aUCGUAAGUAUCCUCAUCCAUCCCCAGc -3'
miRNA:   3'- -AGCAUUCAUAGGAGUAGGUAGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.