miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29232 3' -58 NC_006150.1 + 132458 0.66 0.929521
Target:  5'- gCGGuuGgGGAAaGGCCCG-CUUuCCGa -3'
miRNA:   3'- -GCCugCgCCUUgCCGGGCuGAAuGGC- -5'
29232 3' -58 NC_006150.1 + 593 0.66 0.929521
Target:  5'- gGGAgGgGGAAgGGCCgCGugUUcuuggcagACCGc -3'
miRNA:   3'- gCCUgCgCCUUgCCGG-GCugAA--------UGGC- -5'
29232 3' -58 NC_006150.1 + 180508 0.66 0.929027
Target:  5'- aGGACGCGGGgguagagAgGGCCUaGCagUACUGa -3'
miRNA:   3'- gCCUGCGCCU-------UgCCGGGcUGa-AUGGC- -5'
29232 3' -58 NC_006150.1 + 140906 0.66 0.924491
Target:  5'- uGGACGUcuugcCGGCaCCGGCcgUGCCGg -3'
miRNA:   3'- gCCUGCGccuu-GCCG-GGCUGa-AUGGC- -5'
29232 3' -58 NC_006150.1 + 202986 0.66 0.919246
Target:  5'- gCGGAgGCGGAggcgACGGCUgUGGCU-GCUGu -3'
miRNA:   3'- -GCCUgCGCCU----UGCCGG-GCUGAaUGGC- -5'
29232 3' -58 NC_006150.1 + 115160 0.66 0.908118
Target:  5'- gGGAUGgGGAuaAUGGCuCCGgugaGCUUugCGa -3'
miRNA:   3'- gCCUGCgCCU--UGCCG-GGC----UGAAugGC- -5'
29232 3' -58 NC_006150.1 + 12946 0.67 0.902237
Target:  5'- uCGGGCGUGGG--GGUgCUGACUcgACCGg -3'
miRNA:   3'- -GCCUGCGCCUugCCG-GGCUGAa-UGGC- -5'
29232 3' -58 NC_006150.1 + 181270 0.67 0.902237
Target:  5'- gCGGACGCGGAggGCGGgagaggCGGCU-GCCc -3'
miRNA:   3'- -GCCUGCGCCU--UGCCgg----GCUGAaUGGc -5'
29232 3' -58 NC_006150.1 + 88423 0.67 0.896146
Target:  5'- aGGGCGgGGGcgcGCGGCCCaGGagccccaUACCGc -3'
miRNA:   3'- gCCUGCgCCU---UGCCGGG-CUga-----AUGGC- -5'
29232 3' -58 NC_006150.1 + 88701 0.67 0.88335
Target:  5'- uCGGAgCGCuaGGGCGGCCCgGACgacguggaGCCGg -3'
miRNA:   3'- -GCCU-GCGc-CUUGCCGGG-CUGaa------UGGC- -5'
29232 3' -58 NC_006150.1 + 205016 0.67 0.876651
Target:  5'- -aGACGCGG-ACGGCCUGuuACUcccaggagaUACCa -3'
miRNA:   3'- gcCUGCGCCuUGCCGGGC--UGA---------AUGGc -5'
29232 3' -58 NC_006150.1 + 109113 0.68 0.862671
Target:  5'- --aGCGCaGAugACGGCCCGAUUgGCCa -3'
miRNA:   3'- gccUGCGcCU--UGCCGGGCUGAaUGGc -5'
29232 3' -58 NC_006150.1 + 48201 0.68 0.840316
Target:  5'- cCGGACGCGGAAUGGgUCG---UGCUa -3'
miRNA:   3'- -GCCUGCGCCUUGCCgGGCugaAUGGc -5'
29232 3' -58 NC_006150.1 + 220115 0.68 0.840316
Target:  5'- aCGGuuGUGGAggACGGCCCGGagUUugCa -3'
miRNA:   3'- -GCCugCGCCU--UGCCGGGCUg-AAugGc -5'
29232 3' -58 NC_006150.1 + 88407 0.68 0.824557
Target:  5'- gCGGuGCGCGG-ACGGCCgCG-CUgggucUGCCGc -3'
miRNA:   3'- -GCC-UGCGCCuUGCCGG-GCuGA-----AUGGC- -5'
29232 3' -58 NC_006150.1 + 88267 0.69 0.816439
Target:  5'- gGGGgGCGGAGCGugcGCUCGGCUgggcgGCaCGg -3'
miRNA:   3'- gCCUgCGCCUUGC---CGGGCUGAa----UG-GC- -5'
29232 3' -58 NC_006150.1 + 52907 0.69 0.782536
Target:  5'- uGGugGUGGGAU-GCCUGACUcUGCUGu -3'
miRNA:   3'- gCCugCGCCUUGcCGGGCUGA-AUGGC- -5'
29232 3' -58 NC_006150.1 + 120231 0.7 0.76483
Target:  5'- gGGACGCGucauGAUGGCCCuacGGCUgcCCGa -3'
miRNA:   3'- gCCUGCGCc---UUGCCGGG---CUGAauGGC- -5'
29232 3' -58 NC_006150.1 + 170857 0.7 0.755815
Target:  5'- gCGGACGUGGGAUGGgCCGgugugacgcaGCUUgugaaGCCa -3'
miRNA:   3'- -GCCUGCGCCUUGCCgGGC----------UGAA-----UGGc -5'
29232 3' -58 NC_006150.1 + 119526 0.71 0.703742
Target:  5'- uGGACGCGGAGCGcGUUCGcggcgucuuuggcgcGCUcUACCGc -3'
miRNA:   3'- gCCUGCGCCUUGC-CGGGC---------------UGA-AUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.