miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29244 3' -51.9 NC_006150.1 + 38808 0.66 0.994752
Target:  5'- -gAGUCAGuauguggaggaacaUCgUAACGCCAAGCUGUCa -3'
miRNA:   3'- caUUAGUC--------------AG-GUUGUGGUUCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 124901 0.66 0.994184
Target:  5'- --cAUCAcacauGUCCAguGCGCCc-GCCGCCg -3'
miRNA:   3'- cauUAGU-----CAGGU--UGUGGuuCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 754 0.66 0.993287
Target:  5'- ---------aCAGCGCCAGGCUGCCg -3'
miRNA:   3'- cauuagucagGUUGUGGUUCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 98953 0.66 0.993287
Target:  5'- gGUAG--AGUCCAACAau-AGCUGCCa -3'
miRNA:   3'- -CAUUagUCAGGUUGUgguUCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 54028 0.67 0.989918
Target:  5'- -cGGUCAaUCCAGaCACCAAGCgCGUUg -3'
miRNA:   3'- caUUAGUcAGGUU-GUGGUUCG-GCGGa -5'
29244 3' -51.9 NC_006150.1 + 152650 0.67 0.98854
Target:  5'- ----aCAGUCCcgcACACCccgcaggccguGGCCGCCUu -3'
miRNA:   3'- cauuaGUCAGGu--UGUGGu----------UCGGCGGA- -5'
29244 3' -51.9 NC_006150.1 + 91315 0.67 0.98702
Target:  5'- -gGAUCAGUUCAGcCACCAuaCCGCa- -3'
miRNA:   3'- caUUAGUCAGGUU-GUGGUucGGCGga -5'
29244 3' -51.9 NC_006150.1 + 148522 0.67 0.98294
Target:  5'- --cAUCuGUCCAGCGCCAuccugcacagaguuAGCCuGCUg -3'
miRNA:   3'- cauUAGuCAGGUUGUGGU--------------UCGG-CGGa -5'
29244 3' -51.9 NC_006150.1 + 135515 0.68 0.981524
Target:  5'- ----cCAGUCCAccuuggagguCGCCAugguGCCGCCg -3'
miRNA:   3'- cauuaGUCAGGUu---------GUGGUu---CGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 168523 0.68 0.981524
Target:  5'- aUAAUCc-UCCuGGCGCUAGGCUGCCg -3'
miRNA:   3'- cAUUAGucAGG-UUGUGGUUCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 132657 0.68 0.981524
Target:  5'- ----cCAGcCCAuaGguCCGAGCCGCCUu -3'
miRNA:   3'- cauuaGUCaGGU--UguGGUUCGGCGGA- -5'
29244 3' -51.9 NC_006150.1 + 118646 0.68 0.976993
Target:  5'- ---cUCAGUCCcgaaAACGCCGuuaCCGCCa -3'
miRNA:   3'- cauuAGUCAGG----UUGUGGUuc-GGCGGa -5'
29244 3' -51.9 NC_006150.1 + 216490 0.68 0.968739
Target:  5'- ---cUCAG-CCcGCACCGAGaCCGCUg -3'
miRNA:   3'- cauuAGUCaGGuUGUGGUUC-GGCGGa -5'
29244 3' -51.9 NC_006150.1 + 216382 0.69 0.96557
Target:  5'- -----uGGUCCcugccgAGCACCGcAGCCGCCa -3'
miRNA:   3'- cauuagUCAGG------UUGUGGU-UCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 76611 0.69 0.962182
Target:  5'- -gAGUCcaGGUCCGuACAgCAAGuuGCCUg -3'
miRNA:   3'- caUUAG--UCAGGU-UGUgGUUCggCGGA- -5'
29244 3' -51.9 NC_006150.1 + 139853 0.69 0.962182
Target:  5'- --cGUCAaagCCGugACCAcaAGCCGCCa -3'
miRNA:   3'- cauUAGUca-GGUugUGGU--UCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 37041 0.69 0.962182
Target:  5'- gGUGcgCAGUCU-GCGCgAGGCCGCUc -3'
miRNA:   3'- -CAUuaGUCAGGuUGUGgUUCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 168631 0.7 0.941775
Target:  5'- cGUGGacUCGGgCCAACACCAgcaGGCCGgCa -3'
miRNA:   3'- -CAUU--AGUCaGGUUGUGGU---UCGGCgGa -5'
29244 3' -51.9 NC_006150.1 + 2239 0.7 0.936975
Target:  5'- -cGcgCGGUUCAGCugCAggcgagggccguGGCCGCCg -3'
miRNA:   3'- caUuaGUCAGGUUGugGU------------UCGGCGGa -5'
29244 3' -51.9 NC_006150.1 + 196718 0.71 0.909282
Target:  5'- -aAGUUAG-CCAGCACCAcAGCCGUa- -3'
miRNA:   3'- caUUAGUCaGGUUGUGGU-UCGGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.