miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29244 5' -56.5 NC_006150.1 + 32121 0.66 0.954353
Target:  5'- aGAGuucccauuguCCUGGUgGAUGgcGGCCgCGUGUu -3'
miRNA:   3'- gCUC----------GGGCUAgCUACaaCCGG-GCACG- -5'
29244 5' -56.5 NC_006150.1 + 190061 0.66 0.950469
Target:  5'- uGAGgCUGAUUGugcuuggccUGUUGGCC-GUGCu -3'
miRNA:   3'- gCUCgGGCUAGCu--------ACAACCGGgCACG- -5'
29244 5' -56.5 NC_006150.1 + 851 0.67 0.91152
Target:  5'- cCGGGCgCCGG-CGGUGUagacggugUGGCCgCGaGCg -3'
miRNA:   3'- -GCUCG-GGCUaGCUACA--------ACCGG-GCaCG- -5'
29244 5' -56.5 NC_006150.1 + 108974 0.67 0.909785
Target:  5'- gCGAGCCgGGUgaGAggcgccgGUUGGCguaguugcacgcguCCGUGCg -3'
miRNA:   3'- -GCUCGGgCUAg-CUa------CAACCG--------------GGCACG- -5'
29244 5' -56.5 NC_006150.1 + 164506 0.68 0.899577
Target:  5'- -uAGCgCUaGUUGAUGUUGGaagaCCGUGCa -3'
miRNA:   3'- gcUCG-GGcUAGCUACAACCg---GGCACG- -5'
29244 5' -56.5 NC_006150.1 + 45741 0.68 0.897711
Target:  5'- uGGGCCCGAUCGAUacgccuuaUGGgCCGauuaagaaauuacuUGCa -3'
miRNA:   3'- gCUCGGGCUAGCUAca------ACCgGGC--------------ACG- -5'
29244 5' -56.5 NC_006150.1 + 105930 0.68 0.893281
Target:  5'- -cAGCCCGAcgGAUGa-GGCCCGagUGCg -3'
miRNA:   3'- gcUCGGGCUagCUACaaCCGGGC--ACG- -5'
29244 5' -56.5 NC_006150.1 + 168383 0.69 0.851184
Target:  5'- -cGGCCUGc-UGGUGUUGGCCCGaguccacgUGCg -3'
miRNA:   3'- gcUCGGGCuaGCUACAACCGGGC--------ACG- -5'
29244 5' -56.5 NC_006150.1 + 170492 0.7 0.802486
Target:  5'- aCGAGCCaCGGUCGcgggauUGUUGGUCacUGCa -3'
miRNA:   3'- -GCUCGG-GCUAGCu-----ACAACCGGgcACG- -5'
29244 5' -56.5 NC_006150.1 + 169604 1.12 0.002971
Target:  5'- cCGAGCCCGAUCGAUGUUGGCCCGUGCu -3'
miRNA:   3'- -GCUCGGGCUAGCUACAACCGGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.