miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29252 5' -54.3 NC_006150.1 + 83046 0.66 0.965978
Target:  5'- gGACAGC-UUGGuGGCCAAaauacagcGCUGUCGCAu -3'
miRNA:   3'- -UUGUCGuGGUC-CUGGUU--------CGAUAGCGU- -5'
29252 5' -54.3 NC_006150.1 + 91419 0.66 0.962635
Target:  5'- cGCAGCGCCAGGAU--GGCUcUUGa- -3'
miRNA:   3'- uUGUCGUGGUCCUGguUCGAuAGCgu -5'
29252 5' -54.3 NC_006150.1 + 115329 0.66 0.959071
Target:  5'- cGACAGCACCcGcGGCUAuGCgcgccuUCGCAg -3'
miRNA:   3'- -UUGUCGUGGuC-CUGGUuCGau----AGCGU- -5'
29252 5' -54.3 NC_006150.1 + 26470 0.66 0.959071
Target:  5'- --uGGCGCUuGGACCAAGUUuaugCGCu -3'
miRNA:   3'- uugUCGUGGuCCUGGUUCGAua--GCGu -5'
29252 5' -54.3 NC_006150.1 + 172124 0.66 0.955279
Target:  5'- uGCGGCACCcauccuGGGCUccgAGGCUcccGUCGCu -3'
miRNA:   3'- uUGUCGUGGu-----CCUGG---UUCGA---UAGCGu -5'
29252 5' -54.3 NC_006150.1 + 14895 0.66 0.955279
Target:  5'- cAACGGCACCAccauGGACaa--CUAUUGCAg -3'
miRNA:   3'- -UUGUCGUGGU----CCUGguucGAUAGCGU- -5'
29252 5' -54.3 NC_006150.1 + 220159 0.67 0.951256
Target:  5'- -cCAGCugCAGuguGACCGauAGCUGcCGCAg -3'
miRNA:   3'- uuGUCGugGUC---CUGGU--UCGAUaGCGU- -5'
29252 5' -54.3 NC_006150.1 + 83299 0.67 0.951256
Target:  5'- cGACAGCGCUguauuuuGGccACCAAGCUGUC-CGa -3'
miRNA:   3'- -UUGUCGUGGu------CC--UGGUUCGAUAGcGU- -5'
29252 5' -54.3 NC_006150.1 + 51662 0.67 0.946998
Target:  5'- aGACGGCGCuCAGGGCUcaagugaagAAGCUcauggCGCGu -3'
miRNA:   3'- -UUGUCGUG-GUCCUGG---------UUCGAua---GCGU- -5'
29252 5' -54.3 NC_006150.1 + 2174 0.67 0.937764
Target:  5'- cAACGGCACCAGccGCCAGGCcgaacgaGCAg -3'
miRNA:   3'- -UUGUCGUGGUCc-UGGUUCGauag---CGU- -5'
29252 5' -54.3 NC_006150.1 + 216629 0.67 0.937764
Target:  5'- uGGCGGCugCggugcucggcaGGGACCAgGGCUcGUUGCAg -3'
miRNA:   3'- -UUGUCGugG-----------UCCUGGU-UCGA-UAGCGU- -5'
29252 5' -54.3 NC_006150.1 + 36428 0.67 0.927561
Target:  5'- cACAGCGuacuguCCAGuGGCCAcGGCUAgCGCAa -3'
miRNA:   3'- uUGUCGU------GGUC-CUGGU-UCGAUaGCGU- -5'
29252 5' -54.3 NC_006150.1 + 756 0.68 0.916382
Target:  5'- aAACAGCGCCAGGcuGCC-GGCguccugcccCGCAg -3'
miRNA:   3'- -UUGUCGUGGUCC--UGGuUCGaua------GCGU- -5'
29252 5' -54.3 NC_006150.1 + 170 0.68 0.916382
Target:  5'- cACAGCAgCAGGGCCGcAGUgacacCGCGg -3'
miRNA:   3'- uUGUCGUgGUCCUGGU-UCGaua--GCGU- -5'
29252 5' -54.3 NC_006150.1 + 136321 0.68 0.910427
Target:  5'- cGCGGCuuCCAGGAUCucuAGCUcgUGCu -3'
miRNA:   3'- uUGUCGu-GGUCCUGGu--UCGAuaGCGu -5'
29252 5' -54.3 NC_006150.1 + 101757 0.68 0.897796
Target:  5'- aAACGGCGgCAGGAUgAGuCUGUUGCAa -3'
miRNA:   3'- -UUGUCGUgGUCCUGgUUcGAUAGCGU- -5'
29252 5' -54.3 NC_006150.1 + 101062 0.69 0.877092
Target:  5'- cACAGUGCCAGG-CCucGGCgcAUCGCGg -3'
miRNA:   3'- uUGUCGUGGUCCuGGu-UCGa-UAGCGU- -5'
29252 5' -54.3 NC_006150.1 + 157577 0.7 0.812525
Target:  5'- cGGCAGCACCAGuagcACCAagccAGCUGuUUGCAa -3'
miRNA:   3'- -UUGUCGUGGUCc---UGGU----UCGAU-AGCGU- -5'
29252 5' -54.3 NC_006150.1 + 219758 0.71 0.80362
Target:  5'- cGGCGGCGgCAGGACCuGGCguggcCGCGg -3'
miRNA:   3'- -UUGUCGUgGUCCUGGuUCGaua--GCGU- -5'
29252 5' -54.3 NC_006150.1 + 108262 0.71 0.766502
Target:  5'- aAGCAuuuGCAUguGGGCCAAGgUUAUCGCGu -3'
miRNA:   3'- -UUGU---CGUGguCCUGGUUC-GAUAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.