miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29257 5' -60.3 NC_006150.1 + 149580 0.66 0.848365
Target:  5'- gUACGCUUcuccucCGGCUGGGGCccgGCAaaaUCUCg -3'
miRNA:   3'- aGUGUGAGu-----GCCGGCCCCG---CGU---AGGG- -5'
29257 5' -60.3 NC_006150.1 + 109232 0.66 0.847615
Target:  5'- -gGCGUUCgaaggugACGGCCGGGGCGagggCUCg -3'
miRNA:   3'- agUGUGAG-------UGCCGGCCCCGCgua-GGG- -5'
29257 5' -60.3 NC_006150.1 + 35127 0.66 0.840778
Target:  5'- aCGCAUccagcuUCcCGGCUGGuGGC-CAUCCUg -3'
miRNA:   3'- aGUGUG------AGuGCCGGCC-CCGcGUAGGG- -5'
29257 5' -60.3 NC_006150.1 + 1604 0.66 0.833022
Target:  5'- -gGCAgUCACGGCCucgucaucGGaGGUGgAUCCa -3'
miRNA:   3'- agUGUgAGUGCCGG--------CC-CCGCgUAGGg -5'
29257 5' -60.3 NC_006150.1 + 108326 0.66 0.833022
Target:  5'- uUCAUGCggUugGGCaGGGGaccCGCGUCCa -3'
miRNA:   3'- -AGUGUGa-GugCCGgCCCC---GCGUAGGg -5'
29257 5' -60.3 NC_006150.1 + 81764 0.66 0.832238
Target:  5'- aCugGCUCgACGGCCGGuGGaccacaauaugguUGCAgagcaagCCCu -3'
miRNA:   3'- aGugUGAG-UGCCGGCC-CC-------------GCGUa------GGG- -5'
29257 5' -60.3 NC_006150.1 + 178757 0.66 0.832238
Target:  5'- -gACACUgAUGGUguuguaaCGGGGCGCgcugugGUCCa -3'
miRNA:   3'- agUGUGAgUGCCG-------GCCCCGCG------UAGGg -5'
29257 5' -60.3 NC_006150.1 + 145160 0.66 0.808807
Target:  5'- gCGC-CUCGCGGCCGGucCGCGaugaacuugcuUCUCu -3'
miRNA:   3'- aGUGuGAGUGCCGGCCccGCGU-----------AGGG- -5'
29257 5' -60.3 NC_006150.1 + 87636 0.66 0.800441
Target:  5'- -aACGgUCugGGUuauCGGGGCuGCAuugguUCCCu -3'
miRNA:   3'- agUGUgAGugCCG---GCCCCG-CGU-----AGGG- -5'
29257 5' -60.3 NC_006150.1 + 1896 0.66 0.800441
Target:  5'- gUACGgUCGCGGCuaCGGuuaccGCGCAUuCCCa -3'
miRNA:   3'- aGUGUgAGUGCCG--GCCc----CGCGUA-GGG- -5'
29257 5' -60.3 NC_006150.1 + 214520 0.66 0.800441
Target:  5'- aCAacaGC-CACGGUCGGGGCaCAcUCCa -3'
miRNA:   3'- aGUg--UGaGUGCCGGCCCCGcGUaGGG- -5'
29257 5' -60.3 NC_006150.1 + 176389 0.67 0.79194
Target:  5'- cCACACggCAUGcguaGCUGGGGCuGCAacaUCCUg -3'
miRNA:   3'- aGUGUGa-GUGC----CGGCCCCG-CGU---AGGG- -5'
29257 5' -60.3 NC_006150.1 + 27236 0.67 0.783311
Target:  5'- gCACGCUCACGcuauCCGGcGGC-CAcUCCUa -3'
miRNA:   3'- aGUGUGAGUGCc---GGCC-CCGcGU-AGGG- -5'
29257 5' -60.3 NC_006150.1 + 27102 0.67 0.774561
Target:  5'- -gGCACUUGCGGUacccgcgggauCGGGGgGUAUUCUu -3'
miRNA:   3'- agUGUGAGUGCCG-----------GCCCCgCGUAGGG- -5'
29257 5' -60.3 NC_006150.1 + 106717 0.67 0.765698
Target:  5'- gCACGCgaccgacuCGG-CGGGaGCGCGUUCCg -3'
miRNA:   3'- aGUGUGagu-----GCCgGCCC-CGCGUAGGG- -5'
29257 5' -60.3 NC_006150.1 + 116962 0.67 0.765698
Target:  5'- aCGCGCUCAgcuggaccCGGCCcaacgccacGGGGCGaccgauuucaCAUCCUu -3'
miRNA:   3'- aGUGUGAGU--------GCCGG---------CCCCGC----------GUAGGG- -5'
29257 5' -60.3 NC_006150.1 + 205682 0.68 0.710576
Target:  5'- aCACauaguGCUCGau-CUGGGGCGCGUCCa -3'
miRNA:   3'- aGUG-----UGAGUgccGGCCCCGCGUAGGg -5'
29257 5' -60.3 NC_006150.1 + 980 0.68 0.691646
Target:  5'- cCACACgCG-GGCCGGGGgaaGUCCCu -3'
miRNA:   3'- aGUGUGaGUgCCGGCCCCgcgUAGGG- -5'
29257 5' -60.3 NC_006150.1 + 132466 0.69 0.653316
Target:  5'- aCAUACUUGCGGuuGGGGaaaggCCCg -3'
miRNA:   3'- aGUGUGAGUGCCggCCCCgcguaGGG- -5'
29257 5' -60.3 NC_006150.1 + 129871 0.7 0.605112
Target:  5'- aCGCGCUCACagaaacagaaGCUGGGGuCGUGUCUCu -3'
miRNA:   3'- aGUGUGAGUGc---------CGGCCCC-GCGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.