Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29264 | 3' | -61.1 | NC_006150.1 | + | 220432 | 1.09 | 0.001319 |
Target: 5'- aCGUGGCCCAACGCAGCCGCAGCUGCGg -3' miRNA: 3'- -GCACCGGGUUGCGUCGGCGUCGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 104093 | 0.76 | 0.234612 |
Target: 5'- cCGcGGCuguucCCAGCGCGGCUGUGGCUGCa -3' miRNA: 3'- -GCaCCG-----GGUUGCGUCGGCGUCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 220167 | 0.75 | 0.300622 |
Target: 5'- aGUGuGaCCGAUaGCuGCCGCAGCUGCGg -3' miRNA: 3'- gCAC-CgGGUUG-CGuCGGCGUCGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 1011 | 0.74 | 0.327953 |
Target: 5'- gGUGGCCUGACGCuaGGCggCGCAGCgaGCGc -3' miRNA: 3'- gCACCGGGUUGCG--UCG--GCGUCGa-CGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 167333 | 0.71 | 0.454778 |
Target: 5'- -cUGGUCC-GCGCAGCCGCcGCgGUGa -3' miRNA: 3'- gcACCGGGuUGCGUCGGCGuCGaCGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 91904 | 0.71 | 0.490429 |
Target: 5'- -aUGGCCac-CGUAGCCG-GGCUGCGg -3' miRNA: 3'- gcACCGGguuGCGUCGGCgUCGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 106252 | 0.7 | 0.527325 |
Target: 5'- gCG-GGCUCAGCugacggcaaCAGCCGCGGCcGCGg -3' miRNA: 3'- -GCaCCGGGUUGc--------GUCGGCGUCGaCGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 176378 | 0.7 | 0.527325 |
Target: 5'- aGUGccaaaGCCCAcacggcauGCGUAGCUGgGGCUGCa -3' miRNA: 3'- gCAC-----CGGGU--------UGCGUCGGCgUCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 133354 | 0.7 | 0.555662 |
Target: 5'- -uUGGCcaCCGACGCGGCgucaGCAuGCUGCa -3' miRNA: 3'- gcACCG--GGUUGCGUCGg---CGU-CGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 85333 | 0.69 | 0.565209 |
Target: 5'- aGUGGCCCGugGUGaugaacGCCGCGGaccaucGCGa -3' miRNA: 3'- gCACCGGGUugCGU------CGGCGUCga----CGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 129652 | 0.69 | 0.574799 |
Target: 5'- aCGUGGCCCGccucguCGCGGaCCuGCcuGCUGUGc -3' miRNA: 3'- -GCACCGGGUu-----GCGUC-GG-CGu-CGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 8084 | 0.69 | 0.603764 |
Target: 5'- -aUGGgCCAGCGCAgucaguGCCGCccucGCUGUGa -3' miRNA: 3'- gcACCgGGUUGCGU------CGGCGu---CGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 217910 | 0.69 | 0.603764 |
Target: 5'- aGUGGUgucgCUAGCGCGGCuCGC-GCUGUa -3' miRNA: 3'- gCACCG----GGUUGCGUCG-GCGuCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 215908 | 0.68 | 0.62318 |
Target: 5'- --gGGUCCGuACaaCGGCUGCAGCUGCa -3' miRNA: 3'- gcaCCGGGU-UGc-GUCGGCGUCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 132439 | 0.68 | 0.6329 |
Target: 5'- gGUGGCCgAGgaguuugucucCGCGGUCGCGGCUcugGCc -3' miRNA: 3'- gCACCGGgUU-----------GCGUCGGCGUCGA---CGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 154827 | 0.68 | 0.652332 |
Target: 5'- -cUGGCCCu-CGCGGCCGCcguGCUcaucGCu -3' miRNA: 3'- gcACCGGGuuGCGUCGGCGu--CGA----CGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 106529 | 0.68 | 0.653302 |
Target: 5'- aCGUcGUCCuccuccucucccccCGCGGCCGCGGCUGUu -3' miRNA: 3'- -GCAcCGGGuu------------GCGUCGGCGUCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 219995 | 0.68 | 0.662029 |
Target: 5'- --aGGUCCugcCGCcGCCGCuGCUGCu -3' miRNA: 3'- gcaCCGGGuu-GCGuCGGCGuCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 112693 | 0.67 | 0.681352 |
Target: 5'- gGUGGCCCGACGUcgGGCCGagauCGGUUa-- -3' miRNA: 3'- gCACCGGGUUGCG--UCGGC----GUCGAcgc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 50016 | 0.67 | 0.690963 |
Target: 5'- -aUGGCCC-ACGUGGacacaagucaUGCAGCUGUGg -3' miRNA: 3'- gcACCGGGuUGCGUCg---------GCGUCGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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