miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29264 3' -61.1 NC_006150.1 + 70030 0.66 0.773642
Target:  5'- aCG-GGUCCGgcgugacgGCGCAgcGCCGCcacgagcgcuuccAGCUGCGc -3'
miRNA:   3'- -GCaCCGGGU--------UGCGU--CGGCG-------------UCGACGC- -5'
29264 3' -61.1 NC_006150.1 + 36044 0.67 0.710043
Target:  5'- aGUGaGCUCGGCGUccuccAGCCGaGGCUGgGg -3'
miRNA:   3'- gCAC-CGGGUUGCG-----UCGGCgUCGACgC- -5'
29264 3' -61.1 NC_006150.1 + 35949 0.67 0.719497
Target:  5'- -cUGGCCaCAcucugcugcacACGCAGCUgcucaGCAGCUGUc -3'
miRNA:   3'- gcACCGG-GU-----------UGCGUCGG-----CGUCGACGc -5'
29264 3' -61.1 NC_006150.1 + 76825 0.67 0.728885
Target:  5'- aGUGcGCCacucaUAGCGguGCCGCAGCa--- -3'
miRNA:   3'- gCAC-CGG-----GUUGCguCGGCGUCGacgc -5'
29264 3' -61.1 NC_006150.1 + 181257 0.66 0.747425
Target:  5'- uCGUGGUgCCGAgGCGGaCGCGGaggGCGg -3'
miRNA:   3'- -GCACCG-GGUUgCGUCgGCGUCga-CGC- -5'
29264 3' -61.1 NC_006150.1 + 87817 0.66 0.7647
Target:  5'- --cGGCCUgccggagcucgguGGCGCAGuCCGCGGC-GCc -3'
miRNA:   3'- gcaCCGGG-------------UUGCGUC-GGCGUCGaCGc -5'
29264 3' -61.1 NC_006150.1 + 88277 0.66 0.7656
Target:  5'- gCGUGcGCUCGGCuggGCGGCacggaaGCcuGGCUGCGa -3'
miRNA:   3'- -GCAC-CGGGUUG---CGUCGg-----CG--UCGACGC- -5'
29264 3' -61.1 NC_006150.1 + 106138 0.66 0.7656
Target:  5'- uGUGGCCCuuUGCAGC-GUGGg-GCGg -3'
miRNA:   3'- gCACCGGGuuGCGUCGgCGUCgaCGC- -5'
29264 3' -61.1 NC_006150.1 + 133409 0.66 0.7656
Target:  5'- cCGUGGaaaCCgAGgGCGGCuCGCAGC-GCa -3'
miRNA:   3'- -GCACCg--GG-UUgCGUCG-GCGUCGaCGc -5'
29264 3' -61.1 NC_006150.1 + 90510 0.67 0.700529
Target:  5'- -cUGGCagcgCAACGCGGCCG-AGuCUGCa -3'
miRNA:   3'- gcACCGg---GUUGCGUCGGCgUC-GACGc -5'
29264 3' -61.1 NC_006150.1 + 112693 0.67 0.681352
Target:  5'- gGUGGCCCGACGUcgGGCCGagauCGGUUa-- -3'
miRNA:   3'- gCACCGGGUUGCG--UCGGC----GUCGAcgc -5'
29264 3' -61.1 NC_006150.1 + 132439 0.68 0.6329
Target:  5'- gGUGGCCgAGgaguuugucucCGCGGUCGCGGCUcugGCc -3'
miRNA:   3'- gCACCGGgUU-----------GCGUCGGCGUCGA---CGc -5'
29264 3' -61.1 NC_006150.1 + 220167 0.75 0.300622
Target:  5'- aGUGuGaCCGAUaGCuGCCGCAGCUGCGg -3'
miRNA:   3'- gCAC-CgGGUUG-CGuCGGCGUCGACGC- -5'
29264 3' -61.1 NC_006150.1 + 167333 0.71 0.454778
Target:  5'- -cUGGUCC-GCGCAGCCGCcGCgGUGa -3'
miRNA:   3'- gcACCGGGuUGCGUCGGCGuCGaCGC- -5'
29264 3' -61.1 NC_006150.1 + 176378 0.7 0.527325
Target:  5'- aGUGccaaaGCCCAcacggcauGCGUAGCUGgGGCUGCa -3'
miRNA:   3'- gCAC-----CGGGU--------UGCGUCGGCgUCGACGc -5'
29264 3' -61.1 NC_006150.1 + 106252 0.7 0.527325
Target:  5'- gCG-GGCUCAGCugacggcaaCAGCCGCGGCcGCGg -3'
miRNA:   3'- -GCaCCGGGUUGc--------GUCGGCGUCGaCGC- -5'
29264 3' -61.1 NC_006150.1 + 129652 0.69 0.574799
Target:  5'- aCGUGGCCCGccucguCGCGGaCCuGCcuGCUGUGc -3'
miRNA:   3'- -GCACCGGGUu-----GCGUC-GG-CGu-CGACGC- -5'
29264 3' -61.1 NC_006150.1 + 217910 0.69 0.603764
Target:  5'- aGUGGUgucgCUAGCGCGGCuCGC-GCUGUa -3'
miRNA:   3'- gCACCG----GGUUGCGUCG-GCGuCGACGc -5'
29264 3' -61.1 NC_006150.1 + 8084 0.69 0.603764
Target:  5'- -aUGGgCCAGCGCAgucaguGCCGCccucGCUGUGa -3'
miRNA:   3'- gcACCgGGUUGCGU------CGGCGu---CGACGC- -5'
29264 3' -61.1 NC_006150.1 + 215908 0.68 0.62318
Target:  5'- --gGGUCCGuACaaCGGCUGCAGCUGCa -3'
miRNA:   3'- gcaCCGGGU-UGc-GUCGGCGUCGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.