Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29266 | 3' | -54.7 | NC_006150.1 | + | 377 | 1.11 | 0.004559 |
Target: 5'- cGCGAGCCGCGCACGGUGAAACACACAc -3' miRNA: 3'- -CGCUCGGCGCGUGCCACUUUGUGUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 170261 | 0.79 | 0.386879 |
Target: 5'- cGCGAGCCGC-UAUgugGGUGAGACGCGCu -3' miRNA: 3'- -CGCUCGGCGcGUG---CCACUUUGUGUGu -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 119803 | 0.78 | 0.429261 |
Target: 5'- uGCgGGGCCGCaGCGCGGUaGAGCGCGCc -3' miRNA: 3'- -CG-CUCGGCG-CGUGCCAcUUUGUGUGu -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 123773 | 0.78 | 0.455966 |
Target: 5'- aCGAGCUGCGCauaGCGGUGGAAgGCAa- -3' miRNA: 3'- cGCUCGGCGCG---UGCCACUUUgUGUgu -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 128749 | 0.75 | 0.590366 |
Target: 5'- gGUGuuccGCCGCGguCGGUGGGAUugACAa -3' miRNA: 3'- -CGCu---CGGCGCguGCCACUUUGugUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 75662 | 0.73 | 0.739396 |
Target: 5'- -aGAGuuGCGCACGGUGuucUugACAa -3' miRNA: 3'- cgCUCggCGCGUGCCACuuuGugUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 167339 | 0.71 | 0.81239 |
Target: 5'- cGCGcAGCCGC-CGCGGUGAugUugAUg -3' miRNA: 3'- -CGC-UCGGCGcGUGCCACUuuGugUGu -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 182009 | 0.7 | 0.853161 |
Target: 5'- gGUGAGCUGCGCA-GGUaauccuGACGCACc -3' miRNA: 3'- -CGCUCGGCGCGUgCCAcu----UUGUGUGu -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 88413 | 0.7 | 0.868164 |
Target: 5'- cGCGgacGGCCGCGCugGGUcu-GC-CGCGg -3' miRNA: 3'- -CGC---UCGGCGCGugCCAcuuUGuGUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 168786 | 0.7 | 0.875361 |
Target: 5'- uGCGAGCCGUGCcCGGcUGGguccuacaacGACaaGCGCGa -3' miRNA: 3'- -CGCUCGGCGCGuGCC-ACU----------UUG--UGUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 139465 | 0.7 | 0.882349 |
Target: 5'- -aGAGCCGgGUGCGG-GAAuuGCGCGa -3' miRNA: 3'- cgCUCGGCgCGUGCCaCUUugUGUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 86412 | 0.69 | 0.895677 |
Target: 5'- gGCGcGCCagGCGCACGGU---GCACAUu -3' miRNA: 3'- -CGCuCGG--CGCGUGCCAcuuUGUGUGu -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 55370 | 0.69 | 0.908118 |
Target: 5'- uGCGGugaccaagcuGCCGUGCACGGUGcgaaucguCACugAg -3' miRNA: 3'- -CGCU----------CGGCGCGUGCCACuuu-----GUGugU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 71048 | 0.68 | 0.921846 |
Target: 5'- -gGAGCCGCGUAUcagugcggcgcaaggGGUGcgcucgcuGGCGCACAu -3' miRNA: 3'- cgCUCGGCGCGUG---------------CCACu-------UUGUGUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 125207 | 0.68 | 0.930263 |
Target: 5'- aGCGAGCCGCGU--GGcucaUGAGAUAC-CGa -3' miRNA: 3'- -CGCUCGGCGCGugCC----ACUUUGUGuGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 69367 | 0.68 | 0.930263 |
Target: 5'- cGUGAGCCGCaGCAaccgUGGgauguugacGGAGCGCACc -3' miRNA: 3'- -CGCUCGGCG-CGU----GCCa--------CUUUGUGUGu -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 118031 | 0.68 | 0.935223 |
Target: 5'- uCGAGcCCGCGguCGCGGuUGAgaaGAUACACGg -3' miRNA: 3'- cGCUC-GGCGC--GUGCC-ACU---UUGUGUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 171215 | 0.68 | 0.935223 |
Target: 5'- cGUGAGuCUGCGCG-GGUGucuGugGCGCGg -3' miRNA: 3'- -CGCUC-GGCGCGUgCCACu--UugUGUGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 115712 | 0.68 | 0.939953 |
Target: 5'- aGCGAGCCGCGguUGG----ACGCcCAa -3' miRNA: 3'- -CGCUCGGCGCguGCCacuuUGUGuGU- -5' |
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29266 | 3' | -54.7 | NC_006150.1 | + | 83269 | 0.68 | 0.944015 |
Target: 5'- cGCGugacuguGGCCGCuaACGGUGcGAugACGCc -3' miRNA: 3'- -CGC-------UCGGCGcgUGCCAC-UUugUGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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