miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29266 3' -54.7 NC_006150.1 + 377 1.11 0.004559
Target:  5'- cGCGAGCCGCGCACGGUGAAACACACAc -3'
miRNA:   3'- -CGCUCGGCGCGUGCCACUUUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 75260 0.67 0.94873
Target:  5'- -gGGGCCGCGCucaaugagagcuGCGGccgUGAcaccgcgauAGCACACGa -3'
miRNA:   3'- cgCUCGGCGCG------------UGCC---ACU---------UUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 108973 0.67 0.956238
Target:  5'- uGCGAGCCgggugagagGCGC-CGGUuggcguaGuuGCACGCGu -3'
miRNA:   3'- -CGCUCGG---------CGCGuGCCA-------CuuUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 116114 0.67 0.960223
Target:  5'- ---cGCUGCGCgaACGGuUGAGAUACGCc -3'
miRNA:   3'- cgcuCGGCGCG--UGCC-ACUUUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 82242 0.66 0.969802
Target:  5'- aGCGaAGuCUGUGUACGGUucuGGCGCACc -3'
miRNA:   3'- -CGC-UC-GGCGCGUGCCAcu-UUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 150229 0.66 0.972593
Target:  5'- gGCGAGuCUGCucguCAUGGUuAAGCAUACAa -3'
miRNA:   3'- -CGCUC-GGCGc---GUGCCAcUUUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 63691 0.66 0.975193
Target:  5'- --aAGCUGCGCGCcGUGuu-CGCGCAa -3'
miRNA:   3'- cgcUCGGCGCGUGcCACuuuGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 169816 0.66 0.975193
Target:  5'- -aGAaCCGCGCGCGGauAGACAC-CAu -3'
miRNA:   3'- cgCUcGGCGCGUGCCacUUUGUGuGU- -5'
29266 3' -54.7 NC_006150.1 + 88247 0.65 0.979629
Target:  5'- aGCG-GCCGCGCagcccugGCGG-GggGCGgaGCGu -3'
miRNA:   3'- -CGCuCGGCGCG-------UGCCaCuuUGUg-UGU- -5'
29266 3' -54.7 NC_006150.1 + 83269 0.68 0.944015
Target:  5'- cGCGugacuguGGCCGCuaACGGUGcGAugACGCc -3'
miRNA:   3'- -CGC-------UCGGCGcgUGCCAC-UUugUGUGu -5'
29266 3' -54.7 NC_006150.1 + 115712 0.68 0.939953
Target:  5'- aGCGAGCCGCGguUGG----ACGCcCAa -3'
miRNA:   3'- -CGCUCGGCGCguGCCacuuUGUGuGU- -5'
29266 3' -54.7 NC_006150.1 + 128749 0.75 0.590366
Target:  5'- gGUGuuccGCCGCGguCGGUGGGAUugACAa -3'
miRNA:   3'- -CGCu---CGGCGCguGCCACUUUGugUGU- -5'
29266 3' -54.7 NC_006150.1 + 75662 0.73 0.739396
Target:  5'- -aGAGuuGCGCACGGUGuucUugACAa -3'
miRNA:   3'- cgCUCggCGCGUGCCACuuuGugUGU- -5'
29266 3' -54.7 NC_006150.1 + 167339 0.71 0.81239
Target:  5'- cGCGcAGCCGC-CGCGGUGAugUugAUg -3'
miRNA:   3'- -CGC-UCGGCGcGUGCCACUuuGugUGu -5'
29266 3' -54.7 NC_006150.1 + 182009 0.7 0.853161
Target:  5'- gGUGAGCUGCGCA-GGUaauccuGACGCACc -3'
miRNA:   3'- -CGCUCGGCGCGUgCCAcu----UUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 88413 0.7 0.868164
Target:  5'- cGCGgacGGCCGCGCugGGUcu-GC-CGCGg -3'
miRNA:   3'- -CGC---UCGGCGCGugCCAcuuUGuGUGU- -5'
29266 3' -54.7 NC_006150.1 + 69367 0.68 0.930263
Target:  5'- cGUGAGCCGCaGCAaccgUGGgauguugacGGAGCGCACc -3'
miRNA:   3'- -CGCUCGGCG-CGU----GCCa--------CUUUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 171215 0.68 0.935223
Target:  5'- cGUGAGuCUGCGCG-GGUGucuGugGCGCGg -3'
miRNA:   3'- -CGCUC-GGCGCGUgCCACu--UugUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 118031 0.68 0.935223
Target:  5'- uCGAGcCCGCGguCGCGGuUGAgaaGAUACACGg -3'
miRNA:   3'- cGCUC-GGCGC--GUGCC-ACU---UUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 218155 0.66 0.968631
Target:  5'- cGCGAGCCGCGCuagcgacaccacuUGGUGugugUACAg- -3'
miRNA:   3'- -CGCUCGGCGCGu------------GCCACuuu-GUGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.