miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29274 3' -58.5 NC_006150.1 + 152931 0.66 0.872543
Target:  5'- -aCCUaauGAACCaCCGCGUC-CUGCUGGAg -3'
miRNA:   3'- uaGGG---UUUGG-GGUGCAGaGGCGGCUU- -5'
29274 3' -58.5 NC_006150.1 + 204655 0.66 0.868246
Target:  5'- cUCCCAAGCCCCcuggcgagggucaaaACG-CUCCGUUa-- -3'
miRNA:   3'- uAGGGUUUGGGG---------------UGCaGAGGCGGcuu -5'
29274 3' -58.5 NC_006150.1 + 182763 0.66 0.850351
Target:  5'- cUCCCucGCCUCACGuUCUgaGCUGAAc -3'
miRNA:   3'- uAGGGuuUGGGGUGC-AGAggCGGCUU- -5'
29274 3' -58.5 NC_006150.1 + 149504 0.66 0.849582
Target:  5'- -aCCCGAgguggaaGCCCCuCGUCgcCCGCCGc- -3'
miRNA:   3'- uaGGGUU-------UGGGGuGCAGa-GGCGGCuu -5'
29274 3' -58.5 NC_006150.1 + 86224 0.66 0.842573
Target:  5'- -aCCCAaacaGACUCCGCGccaccCUCCGCCa-- -3'
miRNA:   3'- uaGGGU----UUGGGGUGCa----GAGGCGGcuu -5'
29274 3' -58.5 NC_006150.1 + 62970 0.67 0.818179
Target:  5'- gGUCCCGGGuCUCCGCgGUC-CCGuuGAAc -3'
miRNA:   3'- -UAGGGUUU-GGGGUG-CAGaGGCggCUU- -5'
29274 3' -58.5 NC_006150.1 + 66135 0.67 0.809719
Target:  5'- gAUCCUAAACCCCGUGg--CCGCCu-- -3'
miRNA:   3'- -UAGGGUUUGGGGUGCagaGGCGGcuu -5'
29274 3' -58.5 NC_006150.1 + 65178 0.67 0.801107
Target:  5'- -cCCCcAGCgCCACGg--CCGCCGAGc -3'
miRNA:   3'- uaGGGuUUGgGGUGCagaGGCGGCUU- -5'
29274 3' -58.5 NC_006150.1 + 93165 0.67 0.792351
Target:  5'- -cCCCAuAGCCCCcacuGCGUUUCCGUCa-- -3'
miRNA:   3'- uaGGGU-UUGGGG----UGCAGAGGCGGcuu -5'
29274 3' -58.5 NC_006150.1 + 215515 0.71 0.587723
Target:  5'- uUCCCGucucugcaauuCCCCACGUCaUCCGCCc-- -3'
miRNA:   3'- uAGGGUuu---------GGGGUGCAG-AGGCGGcuu -5'
29274 3' -58.5 NC_006150.1 + 29529 0.73 0.484005
Target:  5'- aAUCCCAGACCCCGauucgUGUUUCguuUGCCGAAc -3'
miRNA:   3'- -UAGGGUUUGGGGU-----GCAGAG---GCGGCUU- -5'
29274 3' -58.5 NC_006150.1 + 8738 1.04 0.004683
Target:  5'- gAUCCCAAACCCCACGUCUCCGCCGAAg -3'
miRNA:   3'- -UAGGGUUUGGGGUGCAGAGGCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.