miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29274 5' -54.3 NC_006150.1 + 194752 0.66 0.97489
Target:  5'- --aCCAGaGACCCGGagugaGGAGCAGu--- -3'
miRNA:   3'- aaaGGUCaUUGGGCC-----CCUCGUCuacu -5'
29274 5' -54.3 NC_006150.1 + 55271 0.66 0.97489
Target:  5'- aUUUgA-UAGCCgGGGGAGCAGAa-- -3'
miRNA:   3'- aAAGgUcAUUGGgCCCCUCGUCUacu -5'
29274 5' -54.3 NC_006150.1 + 192172 0.66 0.969343
Target:  5'- --cUCAGaAGCUCGGGGAGCA--UGGg -3'
miRNA:   3'- aaaGGUCaUUGGGCCCCUCGUcuACU- -5'
29274 5' -54.3 NC_006150.1 + 220885 0.66 0.969343
Target:  5'- --gCCAGUGAgUUGGaGGAGCAGGc-- -3'
miRNA:   3'- aaaGGUCAUUgGGCC-CCUCGUCUacu -5'
29274 5' -54.3 NC_006150.1 + 124777 0.66 0.969343
Target:  5'- --aCCuGUgcGACCUcGGGAGCGGGUGu -3'
miRNA:   3'- aaaGGuCA--UUGGGcCCCUCGUCUACu -5'
29274 5' -54.3 NC_006150.1 + 144538 0.66 0.969343
Target:  5'- ----gAGUAGCCCuauaggaauuGGGGAGCAGGg-- -3'
miRNA:   3'- aaaggUCAUUGGG----------CCCCUCGUCUacu -5'
29274 5' -54.3 NC_006150.1 + 1759 0.67 0.951778
Target:  5'- ----gGGUGA--CGGGGGGCAGGUGAg -3'
miRNA:   3'- aaaggUCAUUggGCCCCUCGUCUACU- -5'
29274 5' -54.3 NC_006150.1 + 88320 0.68 0.928486
Target:  5'- -aUCCccccGACCaGGGGAGCAGggGAg -3'
miRNA:   3'- aaAGGuca-UUGGgCCCCUCGUCuaCU- -5'
29274 5' -54.3 NC_006150.1 + 215791 0.69 0.892683
Target:  5'- --gUCGGUGAUCUGGGacacauuguGGGCGGAUGAc -3'
miRNA:   3'- aaaGGUCAUUGGGCCC---------CUCGUCUACU- -5'
29274 5' -54.3 NC_006150.1 + 34995 0.7 0.839838
Target:  5'- -cUCCAGUAAcuaaaguCCCGGGGGGUgAGAa-- -3'
miRNA:   3'- aaAGGUCAUU-------GGGCCCCUCG-UCUacu -5'
29274 5' -54.3 NC_006150.1 + 438 0.7 0.837379
Target:  5'- gUUCCGGgaggcuggaggggGGCCCGGGGGucGCGGcgGGg -3'
miRNA:   3'- aAAGGUCa------------UUGGGCCCCU--CGUCuaCU- -5'
29274 5' -54.3 NC_006150.1 + 88617 0.73 0.691595
Target:  5'- --cCCGGccAACCCGGGGAccgcacagcucGCAGGUGGg -3'
miRNA:   3'- aaaGGUCa-UUGGGCCCCU-----------CGUCUACU- -5'
29274 5' -54.3 NC_006150.1 + 8773 1.06 0.007798
Target:  5'- gUUUCCAGUAACCCGGGGAGCAGAUGAc -3'
miRNA:   3'- -AAAGGUCAUUGGGCCCCUCGUCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.