miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29283 5' -56 NC_006150.1 + 999 0.68 0.887037
Target:  5'- cUAGGCGGCGCaGCgaGCGccacacGCGGGCCg -3'
miRNA:   3'- -AUUCGCCGUG-CGg-CGCau----UGUCUGGg -5'
29283 5' -56 NC_006150.1 + 88791 0.68 0.880216
Target:  5'- -cGGCGGCAUccagGUCGUGUAguGCAGccGCCUg -3'
miRNA:   3'- auUCGCCGUG----CGGCGCAU--UGUC--UGGG- -5'
29283 5' -56 NC_006150.1 + 215120 0.68 0.880216
Target:  5'- gAGGCGGCAgcaccCGCCGUaGUAGgAGGuuucuCCCa -3'
miRNA:   3'- aUUCGCCGU-----GCGGCG-CAUUgUCU-----GGG- -5'
29283 5' -56 NC_006150.1 + 221209 0.68 0.880216
Target:  5'- gGGGUGGCGCGCUGgCGUGAaGGGC-- -3'
miRNA:   3'- aUUCGCCGUGCGGC-GCAUUgUCUGgg -5'
29283 5' -56 NC_006150.1 + 46751 0.68 0.873184
Target:  5'- gUAAGC-GCACGCaucuGCGU--UAGGCCCu -3'
miRNA:   3'- -AUUCGcCGUGCGg---CGCAuuGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 147354 0.68 0.872469
Target:  5'- gGAGgGGCACggcaaaaGCCGCGgccgaGGCuGACCUu -3'
miRNA:   3'- aUUCgCCGUG-------CGGCGCa----UUGuCUGGG- -5'
29283 5' -56 NC_006150.1 + 84667 0.69 0.858503
Target:  5'- cGAGgGGUcaGCGCCGaCGUcuaaucGCAGugCCa -3'
miRNA:   3'- aUUCgCCG--UGCGGC-GCAu-----UGUCugGG- -5'
29283 5' -56 NC_006150.1 + 101167 0.69 0.858503
Target:  5'- --uGCgGGCACGUCGCGUcGACGaGCUCu -3'
miRNA:   3'- auuCG-CCGUGCGGCGCA-UUGUcUGGG- -5'
29283 5' -56 NC_006150.1 + 123978 0.69 0.850865
Target:  5'- -cAGgGGCACGCCGUGgcguc-GCCCu -3'
miRNA:   3'- auUCgCCGUGCGGCGCauugucUGGG- -5'
29283 5' -56 NC_006150.1 + 113070 0.69 0.850865
Target:  5'- --uGCGGCGUGCCGUgcaGUGACGacuuGACCUg -3'
miRNA:   3'- auuCGCCGUGCGGCG---CAUUGU----CUGGG- -5'
29283 5' -56 NC_006150.1 + 71204 0.69 0.850865
Target:  5'- cAAGCGGCugcacuCGCCGCGaaUGAC-GAUCg -3'
miRNA:   3'- aUUCGCCGu-----GCGGCGC--AUUGuCUGGg -5'
29283 5' -56 NC_006150.1 + 106062 0.69 0.835025
Target:  5'- -uAGCGGCAgcggGCCGCGUGACucGCgCa -3'
miRNA:   3'- auUCGCCGUg---CGGCGCAUUGucUGgG- -5'
29283 5' -56 NC_006150.1 + 54876 0.69 0.835025
Target:  5'- gAGGCGGCAUGCguuaUGCuuacgacUGACAGGCUCg -3'
miRNA:   3'- aUUCGCCGUGCG----GCGc------AUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 592 0.69 0.835025
Target:  5'- gGAGgGGgaaGgGCCGCGUGuucuugGCAGACCg -3'
miRNA:   3'- aUUCgCCg--UgCGGCGCAU------UGUCUGGg -5'
29283 5' -56 NC_006150.1 + 63690 0.7 0.818478
Target:  5'- cAAGCuGCGCGCCGUGUucgcgcaauACAGcUCCa -3'
miRNA:   3'- aUUCGcCGUGCGGCGCAu--------UGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 120574 0.7 0.809957
Target:  5'- --cGCGGCccagcuacaACgGCCgGCGUGAC-GACCCa -3'
miRNA:   3'- auuCGCCG---------UG-CGG-CGCAUUGuCUGGG- -5'
29283 5' -56 NC_006150.1 + 143553 0.7 0.792458
Target:  5'- -cGGCGGCGCGCCaGC--AGCGGcGCCUc -3'
miRNA:   3'- auUCGCCGUGCGG-CGcaUUGUC-UGGG- -5'
29283 5' -56 NC_006150.1 + 215419 0.7 0.792458
Target:  5'- gAGGCGGCuGCGaaCCGCacaugGACAGugCCg -3'
miRNA:   3'- aUUCGCCG-UGC--GGCGca---UUGUCugGG- -5'
29283 5' -56 NC_006150.1 + 208049 0.7 0.783496
Target:  5'- aAGGCaGaAUGCCGCGUGAguGugCCu -3'
miRNA:   3'- aUUCGcCgUGCGGCGCAUUguCugGG- -5'
29283 5' -56 NC_006150.1 + 129653 0.71 0.74643
Target:  5'- --cGUGGCcCGCCuCGUcGCGGACCUg -3'
miRNA:   3'- auuCGCCGuGCGGcGCAuUGUCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.